Jeongeupia wiesaeckerbachi: R0382_003245
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Entry
R0382_003245 CDS
T11114
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jwk Jeongeupia wiesaeckerbachi
Pathway
jwk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0382_003245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jwk03019
]
R0382_003245
Enzymes [BR:
jwk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0382_003245
Messenger RNA biogenesis [BR:
jwk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0382_003245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XVK51742
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All DBs
Position
3375560..3377197
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AA seq
545 aa
AA seq
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MTFSSLGLSDVLVRAVQDAGYTEPTPIQTQAIPAILNGGDLLAGAQTGTGKTAGFLLPIL
ERLARNPTDHGKIRVLVLTPTRELAAQVEESVRVYGKYSDIKSMVMFGGVSINPQIKALK
GKIDILVATPGRLLDHASQKTVDLSHIDTLVLDEADRMLDMGFIHDIKKVLALLPAKRQN
LLFSATFSDDIKALADKLLDNPALIEVARRNATADTISQKIYPVDRDKKRQLLAHLIKQH
NWFQVLVFTRTKHGANRLAEQLDKDGISALAIHGNKSQSARTRALTEFKAGTLQVLCATD
IAARGIDIDELPHVVNYELPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEHKLLADIERL
IKRPIPKEVIEGFEPDPDAKPEPILQGRRGQQQQPRRQGGQGQGQGQQRQQRQPRAEGES
QPRRQGGNGEQPAKPRPQGQGQGGKPRGQGGQGSGQPRQGQGQGQGQKRQGQGQGQGQAN
GNRPPRGNATGQGQGQGQGAGNRRQQGGGGDNSRWDHQQPASNENTPIAALFSTPRRHGG
GGRHH
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaccttctcttcccttggcttgagtgacgtactcgtgcgtgccgtgcaggatgccggc
tacaccgaaccgaccccgatccagacccaggccattcccgccattctcaatggcggcgac
ctgctcgccggcgcccagaccggcaccggcaaaaccgccggcttcctgctgccgattctc
gaacgcctcgcccgcaatccgaccgaccacggcaagatccgtgtgctggtgctgaccccg
acgcgcgaactcgccgcccaggtcgaagaaagcgtgcgcgtctacggcaagtacagcgac
atcaaatcgatggtcatgttcggcggcgtcagcatcaatccgcagatcaaggcactcaag
ggcaagatcgacatcctcgtcgccacgccgggtcgcttgctcgaccacgcgtcgcagaag
accgttgatctgagccacatcgacacgctggtgctcgacgaagccgaccgcatgctcgac
atgggcttcatccatgacatcaagaaagtgttggccctgctgccggccaagcgccagaac
ctgctgttctcggcgacgttctccgacgacatcaaggcactcgccgacaagctgctcgac
aacccggcgttgatcgaagtcgcccgtcgcaatgccacggccgacacgatttcgcaaaag
atctacccggtcgatcgcgacaagaagcgtcagctgctcgcgcatctgatcaagcagcac
aactggttccaggtgctggtattcacccgcaccaagcacggcgccaaccgtctggccgaa
cagctcgacaaggacggcatcagcgcgctggcgattcacggcaacaagagccagagcgcc
cgcacccgtgcgctgaccgaattcaaggccggcacgctgcaagtgctgtgcgccaccgac
atcgccgcacgcggcatcgatatcgacgaactgccgcacgtggtcaactacgagctgccg
aacgtccccgaggactacgtgcaccgcatcggccgtaccggtcgtgccggcgccgaaggt
gaagcggtttcgctggtctgcgtcgacgagcacaagctgctggccgacatcgaacgactg
atcaagcgcccgatcccgaaggaagtgatcgaaggcttcgagcccgatccggatgccaag
ccggaaccgatcctgcagggtcgacgcggtcagcaacaacaaccgcgccgccagggcgga
caaggtcagggccaaggtcagcagcgccagcaacgtcagccgcgcgccgagggtgaaagc
cagccgcgccgccaaggtggcaacggcgagcagccggccaagccgcgcccgcaaggacag
ggccagggcggcaagccgcgcggccagggtggacaaggcagcggccagccgcgtcagggc
caaggccaaggtcagggccaaaaacgccaaggccagggccaaggtcaaggtcaggccaac
ggcaatcgcccgccgcgcggcaacgcgacgggtcaaggccagggccagggtcaaggcgcg
ggcaaccgccgccagcaaggcggtggcggcgacaactcgcgctgggatcaccagcagccg
gcttcgaacgagaatacgccgattgccgccctgttctcgacgccgcgccgccatggtggc
ggtggccgccatcactga
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