Kazachstania africana: KAFR_0A00860
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Entry
KAFR_0A00860 CDS
T02487
Symbol
KAFR0A00860
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
kaf
Kazachstania africana
Pathway
kaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAFR_0A00860 (KAFR0A00860)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaf03019
]
KAFR_0A00860 (KAFR0A00860)
03041 Spliceosome [BR:
kaf03041
]
KAFR_0A00860 (KAFR0A00860)
03009 Ribosome biogenesis [BR:
kaf03009
]
KAFR_0A00860 (KAFR0A00860)
03016 Transfer RNA biogenesis [BR:
kaf03016
]
KAFR_0A00860 (KAFR0A00860)
Enzymes [BR:
kaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KAFR_0A00860 (KAFR0A00860)
Messenger RNA biogenesis [BR:
kaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
KAFR_0A00860 (KAFR0A00860)
Spliceosome [BR:
kaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
KAFR_0A00860 (KAFR0A00860)
Complex C
U4/U6.U5 tri-SnRNP related factors
KAFR_0A00860 (KAFR0A00860)
Ribosome biogenesis [BR:
kaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
KAFR_0A00860 (KAFR0A00860)
Transfer RNA biogenesis [BR:
kaf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
KAFR_0A00860 (KAFR0A00860)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Death_3
nSTAND3
YodE
AAA_22
HTH_Tnp_ISL3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
13886519
NCBI-ProteinID:
XP_003954659
UniProt:
H2AMC4
LinkDB
All DBs
Position
1:156234..159437
Genome browser
AA seq
1067 aa
AA seq
DB search
MDNDLFDVFSEEPAVVPDMSDEEVEAVSSESSDLTKSNNVKRDISDSEASADDKSKRVKP
NKPTKAKKKETVVPVVADSFEQEASREVDASAGLTNAATTQVEQDGKVRLSHQVRHQVAL
PPNYDYKPIAEHKRTNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAI
AQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSM
LYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEW
ICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQVG
DDPNSIDSRGKKGQTYKGGAAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK
MSKLDFNSDDEKDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE
VIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAG
RRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFML
EHSFFQFQNVVAVPVMEKKLIEIGREAESIHIEDEQNIKEYYEIQQTLKGYNEDVRHIMN
HPANILSFLQPGRLVEVRIDGQNYGWAAVIDFAKRVNKRNPTAVYTDHESYIVNVVVNTM
YVDAPINLIKPFNPTFPEGVRPAQEGEKSVCAILPVTLEAINSVGNLRLFMPKDIRAGGQ
KETVGKSLQEVRRRFPNGIPLLDPVKNMKIEDADFQKLLRKINVLENKLTTNPLQGSVKF
DEYYIQYGKKHKLNEEMKQLKHKISESQSVIQLDDLRRRKRVLRRLGFCTPNDIIELKGR
VACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKETPRLKPELSEPLKAM
RETAAKIAKIMKDSKIEVVEKEYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIR
MFKRLEELVKELIDVANTIGNAALKEKMENVVKLIHRDIVSAGSLYL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggataacgacttatttgatgtcttttctgaggaaccagctgtggttccggatatgtca
gacgaagaagtcgaagcagtctcaagcgagtccagcgacttaactaagagcaataatgtg
aaacgtgacatctcagatagcgaagctagtgcagatgataaatcaaagagagtaaagcct
aataagccaacaaaagcaaaaaagaaggaaacagtggttcctgttgtggcagattctttc
gaacaagaggcctcgagagaagtcgatgcatctgctgggttgactaacgcagccacaact
caagttgagcaggatggtaaggttagattatctcatcaagtgcgtcatcaagttgcctta
cctccaaattacgattataagccaattgctgaacataaaagaacaaacgaggccagaaca
tatcctttcactttagatccattccaagacactgcaatctcctgtatcgatagaggtgag
tctgtgttagtttctgcacacacatctgccggtaaaactgtcgttgcagaatatgcgatt
gctcaatccttgagagaaaagcaaagagtcatttacacatctcctatcaaggccttatct
aaccaaaagtatagagaattgctagcagaatttggagatgttggtttaatgactggtgat
attaccataaatccagatgctggttgtttagttatgacaaccgaaattttaagaagtatg
ctgtatagaggtagtgaagttatgagagaagttgcttgggtcgtcttcgatgaggtacac
tatatgagggataaggaacgtggtgttgtttgggaagaaactattattttattacctgac
aaggttcgttatgtgtttttatctgctactattccaaatgccatggaatttgcggaatgg
atttgtaaaattcattctcaaccgtgccatattgtctatacaaatttccgtccaactccc
ttgcaacattatctatttcctgctcatggtgatggtatttatttagttgtagatgaaaaa
agtacattcagagaagaaaatttccagaaggccatggcctccattagcaaccaagtagga
gatgatccaaactctattgattcaagaggtaaaaagggccagacatacaaaggtggcgct
gcgaaaggtgatgctaagggtgatatctacaaaattgttaaaatgatttggaaaaaaaaa
tacaatccggtcatcgttttctctttcagtaagagagattgtgaagagctagctttaaag
atgtccaaactcgattttaattcagatgatgaaaaagacgccttaactaaaattttcaac
aatgcaattgcattgttaccagaaactgatagagaattacctcaaatcaaacatatttta
cctctattaagaagaggtattggtattcatcactctggtttattgcctattttaaaagaa
gttatcgaaattcttttccaagagggtttcttaaaggttctttttgctacagagactttt
tcaattgggttaaatatgcctgcaaagaccgttgtattcacatctgttagaaaatgggat
ggtcagcaattccgttgggtatctggtggtgaatatattcaaatgtcgggccgagctggt
cgtcgtggtttagatgatcgtggtattgttatcatgatgattgacgagaaaatggaacct
caagttgcaaaggggatggttaaaggtcaagctgacagattagattctgctttccacctt
ggttataacatgattctaaatttgatgcgtgtggaaggtatttctcctgagtttatgctt
gaacattcattctttcaattccaaaatgtcgtagctgtaccagtgatggaaaagaagttg
atcgaaattggtagagaagctgaatctattcatattgaagatgaacaaaatattaaagaa
tactatgaaatacaacaaacactaaaaggttacaacgaagatgttcgccatatcatgaat
catcctgccaatatactgagctttttacaacctggtagattagtagaggttcgtattgat
gggcaaaattatggctgggccgcggtcattgatttcgctaaaagagtgaacaaacgtaat
ccaactgctgtttacactgatcacgaatcatatattgtcaacgttgttgttaatacaatg
tatgtcgatgccccaatcaatttaatcaaacctttcaacccaaccttcccagaaggtgtc
cgtcctgctcaagaaggtgaaaagtccgtatgtgctattcttccagttactttggaggcc
atcaactctgttggtaacttaagattattcatgcctaaggatatcagagcgggtggccaa
aaggagacagtgggtaaatctttacaggaagttaggcgtagatttccaaatggtattcca
cttcttgatccggttaaaaatatgaagatagaagacgctgacttccagaaattactaaga
aagattaatgttttagaaaataaattaactacaaatccgttacaaggatcggtcaaattt
gacgaatattacatacaatacggtaaaaaacataaattaaatgaagagatgaaacaatta
aagcacaaaatcagtgagtctcaatcggtaatccagctagatgacttacgtcgccgtaag
agggttttacgtcgtttaggtttctgcacaccaaatgatattattgaattgaagggtaga
gttgcatgtgagatttcttctggtgatgaattgctattgacagaattgattttcaatggt
aacttcaatgaattaaagccggaacaagctgcagcgctattatcatgttttgccttccaa
gagcgttgtaaggaaactccaagattaaagccagaactttctgaaccattgaaggctatg
agagaaacagctgctaagattgctaaaattatgaaagactccaaaatagaggttgtcgag
aaggagtatgttgaaagtttcagacatgaactgatggaagttgtttatgaatggtgtaga
ggtgcaactttcacacaaatatgtaaaatgacagacgtatatgagggatctcttattaga
atgtttaagagactagaagaactggtgaaggaattaatagatgttgccaatacaattggt
aacgcagccctcaaagaaaaaatggaaaacgttgtcaaattaatacatagagacattgtc
tctgctggttcgttgtatttatag
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integrated database retrieval system
