Kazachstania africana: KAFR_0A01950
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Entry
KAFR_0A01950 CDS
T02487
Symbol
KAFR0A01950
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
kaf
Kazachstania africana
Pathway
kaf03013
Nucleocytoplasmic transport
kaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
KAFR_0A01950 (KAFR0A01950)
03015 mRNA surveillance pathway
KAFR_0A01950 (KAFR0A01950)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaf03019
]
KAFR_0A01950 (KAFR0A01950)
Enzymes [BR:
kaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KAFR_0A01950 (KAFR0A01950)
5.6.2.5 RNA 5'-3' helicase
KAFR_0A01950 (KAFR0A01950)
Messenger RNA biogenesis [BR:
kaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
KAFR_0A01950 (KAFR0A01950)
mRNA cycle factors
Common to processing body (P body) and stress granule
KAFR_0A01950 (KAFR0A01950)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
Helicase_RecD
PhoH
AAA_22
AAA_16
Redoxin
Motif
Other DBs
NCBI-GeneID:
13882339
NCBI-ProteinID:
XP_003954768
UniProt:
H2AMN3
LinkDB
All DBs
Position
1:complement(405159..408146)
Genome browser
AA seq
995 aa
AA seq
DB search
MSGLSNDALSNAENNFTQGYDLQRTSSNSNMKTVVLDLDLEIEEDRVEQVITEDDLKDKT
SELHALQQANEHACAYCGIDSPTCVIKCNSCNKWFCNSKNGTNSSHIVNHLVLSHHNVVS
LHPESDLGDTVLECYNCGRKNVFLLGFVSAKSEAVVVLLCRTPCAQTKNANWDTDQWQPL
IEERQFLSWVAEEPTEEDKVKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEEISPL
LLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVTWSLALNNRHLASFSLSTFES
NELKVAVGDEMILWYSGLNHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPIHLTSGFT
AEFIWKGTSYDRMQDALKKFAVDKKSISGYLYYKILGHEVVDISFDVPLPKEMSIPQFTK
LNDSQSNAVKKVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHL
AAKLRDLGLKVVRLTAKSREDVESSVSSLALHNLVARSSQGELKKLLKMKDEIGELSAAD
TKRFVKLVRKAESEILAKADVVCCTCVGAGDKRLDAKFRTVLIDESTQASEPECLIPIVK
GAKQVILVGDHQQLGPVILERKAADAGLRQSLFERLISLGHVPIRLEVQYRMNPNLSEFP
SNMFYEGSLQNGVTIEQRTVSNSTFPWPIHGVPMMFWANYGREEISANGTSYLNRIEAMN
CERIITRLFKDGVKPEQIGVITPYEGQRAYILQYMQMNGVLDKNLYVKVEVASVDAFQGR
EKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLIILGNPRSLSRNLLWNHLLIHF
REKGCLVEGPLDNLQLSTVQLTKPQPNRNRQQNRSSFKAQFDFDFDSSMGGFSNLQEFDT
QSMMSFGGGAMENGINNVFPPNDGFSSYLQNNYWNFDHMKQEPTQFTNKRGGNVQTNHEA
PLDNNFARQLEHDQEMNFKHADVEEARNGMASLDI
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtctcagtaacgatgctctcagtaacgctgagaataactttactcaaggttac
gatttacagagaacgtctagtaactcaaacatgaagacggttgtcctagacctagacctg
gagatagaagaagacagagttgaacaggtcataacagaagatgatttaaaggataaaact
tccgaacttcacgctttacaacaggcaaatgaacatgcctgtgcatattgtggtattgat
tccccaacatgtgtcataaaatgtaatagttgcaacaaatggttttgtaattcaaaaaat
ggaaccaatagttcgcacattgttaaccacttagtgttatcccatcataatgtggtttct
ctgcatcctgaatctgatctcggcgatactgttctggaatgttataattgtggtaggaaa
aatgttttcttattgggatttgtctctgcaaagagtgaagctgttgttgttttattatgt
agaactccatgtgcgcagaccaaaaatgccaattgggataccgatcaatggcagccacta
attgaagagagacaatttttatcatgggtagctgaagaaccaacggaggaagacaaagtc
aaggcccgtttaatcaccccaagtcaaatttcaaagttagaagctaaatggagatcaaat
aaagatgctaccattaacgatatagatgctccagaagaacaggaagaaatatctccatta
ctgctgagataccaggatgcatatgaatatcaaagatcttacggtcctctaataaaattg
gaggcagattatgataagcaactgaaagaatctcaggctttggagcatatatcagttaca
tggtccttagctttaaacaataggcatttggcctctttctcattatccacttttgaatca
aatgaattaaaagttgctgtaggggatgaaatgattctgtggtattccggcttgaatcat
cctgattgggaaggaagaggttatattgttcgtttacctaatagtttccaggatacattt
accttagaattaaaacctagtaaaacaccacctccaatccatttaacatctggtttcact
gcagaattcatttggaagggtacttcttatgacagaatgcaagatgcgttgaaaaagttt
gcagttgataagaaatcaatttctggctatttatactacaaaattctgggtcatgaggta
gtagatatatcatttgatgttccattgccaaaagaaatgtctatcccccaatttacaaag
ttaaatgattctcaatcaaatgcggtaaagaaagttttacaaagacctttgtctttgatt
caaggacctccaggtactggtaagactgttacatcagctactatagtatatcatctatcc
aagattcataaagatagaattctggtctgtgctccttccaatgttgctgttgaccatctt
gcagcaaaattaagagacttaggcttgaaggttgttcgtttaactgccaaatctagggaa
gatgtagaaagttctgtttctagtttggctttgcataacctggttgcaagaagttctcaa
ggtgagttaaagaaactactgaagatgaaggatgaaatcggggaactctctgcagctgac
accaagagatttgtcaaactagtacggaaagctgaatctgagattttggcaaaggctgat
gttgtttgttgcacttgtgtaggtgcaggcgacaagagactggatgccaagttcagaact
gttctgattgatgaaagtactcaagcttctgaaccggaatgtttaatcccaattgtaaag
ggggctaaacaggtcattttagttggtgatcatcagcaattgggaccagttattttggaa
agaaaagccgcagatgcaggtttaaggcaatctctatttgaaaggttgatctccctaggc
cacgttccaattaggttagaagtacaatatcgtatgaatccaaatctgagtgaatttcca
agtaatatgttctatgaaggtagtttacagaatggtgttacgatagaacaaagaactgtt
tctaacagtactttcccatggcctatccatggtgttccaatgatgttttgggcaaactat
ggtagagaagaaatttcagcaaatggtacatcatatttgaatagaatagaagctatgaac
tgcgaacgtatcattactagattattcaaagatggcgtcaagccagaacaaatcggtgtt
attacgccatatgaaggccagagagcatatatcctacaatatatgcaaatgaatggtgtt
ttggacaaaaatctttatgtaaaagtcgaagttgcttctgttgatgcgttccaaggtcgt
gaaaaagattacattattctttcttgtgttcgtgctaatgaacagcaagccattgggttt
ttacgtgatcctcgtcgtttaaatgttggtttaactcgtgccaaatatgggttaataatt
ttaggtaatccaagatcattatctagaaatttactatggaaccatttattgatacatttc
agagaaaaaggttgtttagttgaaggtccactagataatttacaattatctacagtccaa
ttgactaaaccacaaccaaatcgcaaccgtcaacagaacagaagcagcttcaaggctcaa
tttgattttgatttcgattcaagtatgggagggttctccaatttgcaagaatttgatacg
cagagtatgatgagctttggtggaggtgcaatggagaacgggattaacaatgtatttcca
ccaaatgatggattttcatcttatttacagaacaattattggaattttgaccatatgaaa
caagaacctacgcagtttactaataagaggggaggtaatgttcaaacgaaccatgaagct
ccattagataataattttgcaagacaacttgaacatgaccaggaaatgaattttaagcat
gctgatgttgaagaagctagaaatggaatggcatccctagatatttag
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