Kazachstania africana: KAFR_0C03080
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Entry
KAFR_0C03080 CDS
T02487
Symbol
KAFR0C03080
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
kaf
Kazachstania africana
Pathway
kaf03008
Ribosome biogenesis in eukaryotes
kaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
KAFR_0C03080 (KAFR0C03080)
09123 Folding, sorting and degradation
03018 RNA degradation
KAFR_0C03080 (KAFR0C03080)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaf03019
]
KAFR_0C03080 (KAFR0C03080)
03009 Ribosome biogenesis [BR:
kaf03009
]
KAFR_0C03080 (KAFR0C03080)
03016 Transfer RNA biogenesis [BR:
kaf03016
]
KAFR_0C03080 (KAFR0C03080)
03036 Chromosome and associated proteins [BR:
kaf03036
]
KAFR_0C03080 (KAFR0C03080)
Messenger RNA biogenesis [BR:
kaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
KAFR_0C03080 (KAFR0C03080)
mRNA degradation factors
5'-3' decay
5' exonucleases
KAFR_0C03080 (KAFR0C03080)
Ribosome biogenesis [BR:
kaf03009
]
Eukaryotic type
Pre-60S particles
RNases
KAFR_0C03080 (KAFR0C03080)
Transfer RNA biogenesis [BR:
kaf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
KAFR_0C03080 (KAFR0C03080)
Chromosome and associated proteins [BR:
kaf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
KAFR_0C03080 (KAFR0C03080)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF6438
Motif
Other DBs
NCBI-GeneID:
13885219
NCBI-ProteinID:
XP_003956435
UniProt:
H2ASF0
LinkDB
All DBs
Position
3:complement(611984..616483)
Genome browser
AA seq
1499 aa
AA seq
DB search
MGIPKFFRYISERWPMISQLIEGAQIPEFDNLYLDMNSILHTCTHGNDDDVTKRMTEEEV
FAKIFTYIDHLFHTIKPKKVFYMAIDGVAPRAKMNQQRSRRFRTAMDAEAALKKAIEKGE
EIPKGEPFDSNAITPGTEFMAKLTKNLKYFIHDKISNDSKWREVDVIFSGHEVPGEGEHK
IMDFIRNIRSQKDYNNNTRHCIYGLDADLIMLGLSTHAPHFALLREEVVFGRRSSKPAPL
EHQNFYLLHLSLLREYMELEFNEIADDLKFDYDFERILDDFILVMFVIGNDFLPNLPDLH
LNKGAFPVLLQTFKEALLHLDGYINENGQINLERLRVWLNYLSQFELMNFEKNDIDVEWF
NQQLENISLEGERKRARSGKKLLLKQQKKIVGKVKPWIMHLANEKFPSDLPDDQIPTLLL
NDDKSEFNVAENLAFLKEFAHDLGVFIVHSKSKDTYSLKLDIDGINPSETDEEHNERVGA
IRRVIKRYQQAVLVEDAEELEREQTLYNEKFQNWKQEYYKDKLGFAQNDSETVTTLAKNY
VEGLQWVLYYYYRGCPSWGWYYRDHYAPRISDLEKGLDQIIKFDKGRPFTPFEQLMAVLP
ERSKNLIPAAFRPLMYDTNSPILDFYPSQVKLDKNGKTADWEAVVLLTFVDENRLVDAMK
PLLSKLSPEEKVRNQFGTDLKFIFSPQVDNLYKSPLSGIFSDLENNHCVEREYIPKSMDG
LSFHYGLLPGAKQGTELLAGFPTLQTLPFKYQLEYNESLVFQQASRQQSMCLHIEDIYSE
NNLTLEELSKRYMNKIVYTRWPYLRESKLVSVFDENVLFEGKEFVNEKGKKHFKIIERTC
DIQDKKNFESLKRSMLRNYGKQKAVILNDIKAIVKVLPVTGLMRTPEGAYVKTYAETPDH
YPLQLMVETISNKDERYRERAPVPISQEFPEGSRVIFLGDYAYGGDTTIDGYSSESRLKI
TVKKTFSKNEPTIGKERLEIDNKLVHYIPSYVAAKKLDLNKLFLSRITSKFLIDDANGKH
VNVGIPVKYENKQQKVLGYARRNPKGWEYSNLTINLIREYRSRFPEFFRGLSRTGNGIPS
LQELFPGISTEVAMKKLQEIKDWLKFSEENFVIVSNESDSLTKGSIRAVEDFIEVHSSGR
ENSETKQLTKVPRDAILNPRVSFGLLRTQRFNLGDRVVYIQDSGKVPLFSKGTVVGYTTL
GLSLSVQVLFDHEIVSGNTFGGRLRTKRGLGLDSSFLLNVTDRQFVYHSKASKKLLEGKK
SGTKSVAARNVNMIQRKQKQQEVATMRKQAAHDLLNIIKKTGEKPADGGQKEPAATQERE
TLLKKSGGENADANLPLPNQNVVNSVVNAVMHQFDSNDNQMVSNGQQNVVPTMNNGVVNP
ASLPYSAPPGFVNGVPLGAGYPPNMQMSPQVMNGQPLLPPQSFYAGPMQHPQQHHQQHSH
AHPHPQLPHQNGHVVVNKKASAELKQIFKSDAEQNKSQRPKKTILKRRAETKASAEPKK
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgggtattccaaaatttttcaggtacatcagtgaaagatggccgatgatatcgcaattg
attgaaggagcacagattccagagtttgataacctgtatttggatatgaactcgattctg
catacatgtacacacggtaatgatgatgacgtaacgaaaagaatgactgaagaggaagta
tttgccaaaattttcacctatattgatcacctttttcacactattaaacccaagaaagta
ttttatatggcaatcgatggtgtggccccacgtgccaagatgaaccagcaaaggtctcgt
agatttagaactgccatggatgcagaagcggctttaaagaaggctattgaaaagggggaa
gaaattcctaaaggtgaaccattcgattctaatgctattacgccaggtacagaatttatg
gctaaactgaccaaaaatttaaagtatttcattcatgacaaaatctctaacgattccaaa
tggagagaagttgatgttatcttctctggtcatgaagttcctggtgaaggtgaacacaag
ataatggactttatcagaaacattagatcccaaaaagattataacaataacactaggcat
tgtatttatgggttagatgctgatttgataatgttgggtctctccacacacgctccacat
tttgcgttattaagagaagaagttgtttttggtagaagaagtagtaaaccggctcctctt
gagcatcaaaacttctatcttttgcatttatctctattgagagagtatatggaattagaa
tttaatgaaattgccgatgatttgaaattcgattacgattttgaaaggattcttgacgat
ttcatactagtcatgttcgttattggtaacgatttccttccaaatttgcccgacttacat
ttgaataaaggtgctttccctgtacttttacaaactttcaaagaagctcttctccattta
gatggctacatcaatgaaaatggtcaaatcaatttggaaaggctacgcgtctggttgaat
tacctttcacaatttgaattaatgaatttcgaaaaaaatgatattgatgttgaatggttc
aatcaacaattagaaaatatttccttagaaggtgaaagaaaaagagctcgtagtggtaag
aaattattattgaaacaacaaaagaaaatagtgggcaaagttaaaccttggattatgcac
cttgctaatgaaaaattcccatcagatttgccagatgatcaaattcctactttgttactg
aatgatgataagagtgaattcaatgttgctgaaaatttggcatttttgaaagaatttgct
cacgatttaggggtatttattgtgcattcaaagtctaaggacacttattctctaaaattg
gatattgatggtatcaatcccagcgaaacagatgaagaacataacgaacgtgttggagct
atcagaagagtgataaaaagatatcagcaagctgttcttgttgaagatgctgaagagttg
gaaagggaacaaactttatataatgaaaaattccaaaattggaagcaagaatattataaa
gataaattaggctttgcccaaaatgactccgaaactgtcactacattagccaaaaattat
gttgaaggtctacagtgggttctttattactattatagaggatgtccatcctggggatgg
tactatcgtgatcactatgctcctcgtatttctgatcttgaaaaaggtttagatcaaatc
attaaatttgacaagggcaggcctttcactccatttgagcaacttatggcagtcttacca
gaaagatccaaaaacttgatcccagctgcatttagaccattaatgtacgataccaactct
ccaattctagatttttacccatctcaggtaaaacttgataaaaatggtaagactgctgat
tgggaagctgttgtacttttaacctttgttgatgaaaatcggttagtagatgcaatgaaa
cctttactatctaagctatctccagaagaaaaggtaagaaatcaatttggtacagacttg
aaattcatttttagccctcaggttgataatttgtacaaaagtccattatccggtatcttt
tctgatctcgagaataaccattgtgttgaaagagaatacattccgaaatcaatggacgga
ctaagtttccattacggtttgttacctggtgcaaaacaaggtacagaattattggccggt
ttcccaacattgcaaacattacctttcaaatatcaattagagtacaatgaaagtttagtg
tttcaacaagcctccagacaacagtcgatgtgtctacacattgaggatatttatagtgag
aacaatttaactttagaagaattgtccaagagatatatgaacaaaatcgtttacaccaga
tggccatatcttagagaatcaaaattagtttctgtatttgatgaaaatgttttattcgaa
ggtaaggaatttgttaatgaaaagggtaaaaagcactttaagattattgaaagaacatgc
gatattcaagataaaaagaactttgaatcattgaaaagatcgatgttacgaaattatggc
aagcaaaaagcagtgatcctaaatgatataaaggcaattgttaaagtccttccagttact
ggtctaatgagaactccagaaggtgcatacgttaaaacttatgcagaaacaccggatcat
tatccattgcaactgatggttgaaactatttcaaacaaagatgaaagatatagggaaaga
gctccagttcctattagccaagaatttccagagggctctcgtgttattttcctcggtgac
tatgcctacggtggtgataccacaatcgatggttacagtagtgaaagtagactaaagatc
accgtcaagaagacgttctctaagaatgaaccaactattggtaaagaaagattagagata
gataataaattagttcattatattccatcatacgttgctgccaagaaattagacttgaat
aaactgtttttgtccagaataacatctaagtttttgattgatgatgcaaatggcaaacat
gttaatgttggtattcccgttaagtatgaaaataagcaacaaaaagttctaggttatgca
agaagaaatccaaagggatgggagtattccaatttgacaattaacttgatcagagaatac
agatcaagattcccagaatttttccgcggtctatctagaacaggaaatggtattccaagc
ctacaagaactattccctggtatttctactgaagttgctatgaagaaactgcaagaaatt
aaagattggctgaaattctctgaagaaaatttcgttattgtatcaaacgaaagtgactcc
ttgactaagggctctatccgtgcagttgaagatttcattgaagttcactcgtcgggaagg
gaaaacagtgaaactaagcaattaactaaagttccaagagacgccattttgaatccaaga
gtttccttcggtttattacgtacacaaagattcaatttaggtgaccgtgttgtctacatc
caagattcaggtaaggtcccattgttttcaaagggtacagttgtcggctacaccactttg
gggttgagtctgtcagttcaagttctatttgatcatgaaatagtttccggtaatactttt
ggtggcaggttaagaactaagagaggtttgggacttgattcctcattcttgcttaatgtt
accgatagacaatttgtttaccattctaaggcttctaagaagttgctagaagggaagaaa
tccggtacaaaatctgtcgctgctagaaatgttaatatgatccaacgaaagcaaaaacaa
caggaagttgccactatgagaaagcaagcagcacatgatttgttgaatattatcaagaag
acgggtgaaaaaccagctgatggaggacagaaagaacctgctgcgacccaagagagagaa
acactacttaagaaatccggtggagaaaacgcagatgccaatctacctttaccaaatcag
aatgtggtcaactctgttgtaaatgcagtcatgcatcaatttgattcaaatgacaatcaa
atggtctccaatggacaacagaacgtggtaccaactatgaataatggtgttgttaaccct
gcaagtttaccttacagtgcaccaccaggttttgttaacggggtgccattaggagccggc
tatccaccaaacatgcagatgagtcctcaagttatgaatggacaacctctattaccacca
caaagtttttatgctggaccaatgcaacatccccaacaacaccaccaacagcactcgcac
gcacatcctcaccctcagcttccccatcaaaacggtcatgtagttgttaacaagaaggcc
agtgctgagttaaagcaaatttttaaaagtgatgcagaacagaataaatcccagaggcca
aagaaaactattttgaagaggagagccgaaaccaaagcttccgctgaaccaaaaaaataa
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