Kazachstania africana: KAFR_0F02940
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Entry
KAFR_0F02940 CDS
T02487
Symbol
KAFR0F02940
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kaf
Kazachstania africana
Pathway
kaf03013
Nucleocytoplasmic transport
kaf03015
mRNA surveillance pathway
kaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KAFR_0F02940 (KAFR0F02940)
09122 Translation
03013 Nucleocytoplasmic transport
KAFR_0F02940 (KAFR0F02940)
03015 mRNA surveillance pathway
KAFR_0F02940 (KAFR0F02940)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaf03019
]
KAFR_0F02940 (KAFR0F02940)
03041 Spliceosome [BR:
kaf03041
]
KAFR_0F02940 (KAFR0F02940)
Enzymes [BR:
kaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KAFR_0F02940 (KAFR0F02940)
Messenger RNA biogenesis [BR:
kaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
KAFR_0F02940 (KAFR0F02940)
Spliceosome [BR:
kaf03041
]
Complex C
Other components
EJC/TREX
KAFR_0F02940 (KAFR0F02940)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
KAFR_0F02940 (KAFR0F02940)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
13884358
NCBI-ProteinID:
XP_003958025
UniProt:
H2AWZ0
LinkDB
All DBs
Position
6:582057..583388
Genome browser
AA seq
443 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQEIQVDASNAAEAGNAAEGTTGVEGESTTDGDKKGSYVGIHSTG
FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ
LDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPTSKDAEILKNKET
APHIVVATPGRLKALVRDKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV
MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDD
LEFNQVIIFVKSTARANELTKLLNASNFPAITVHGHMKQAERIARYKAFKDFEKRICVST
DVFGRGIDIERINLAINYDLSNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLSKIQ
ERFDVKIAEFPEEGIDPSTYLNN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaaggagaagaggatttattagaatattccgacaacgaacaagaaattcag
gttgacgcttctaatgctgccgaagctggtaatgccgctgaaggcaccactggagttgag
ggagaatctactactgatggtgataagaagggttcctatgttggtatccattccactggt
ttcaaagatttcctactgaagccagaactatcgagagccattatcgattgtggttttgaa
catccttctgaagttcaacagcataccattcctcaatccattcatggtactgatgtctta
tgtcaagccaaatccggtttaggtaagactgctgtcttcgttctctccactttacaacaa
ttagatccagttccaggtgaagtttctgttgttgtaatctgtaacgcaagagaattggct
tatcaaattcgtaacgaatacttaagattctccaaatatatgcctgatgtgaaaactgct
gtcttttacgggggcactccaacctccaaagatgctgaaattttaaagaacaaagaaact
gcaccacatattgttgttgctaccccaggtcgtttaaaggctttagttagagacaagtat
attgatttatctcacgttaaaaattttgtcattgatgaatgtgataaagttctagaagaa
ttagacatgagaagggatgtgcaagaaattttcagagctaccccaagagataaacaagta
atgatgttttcagctactttatctcaggaaatcagaccaatttgtagacgtttcctacaa
aaccctctagaaattttcgttgatgatgaagccaaactaacgttacacggtttacaacaa
tattatatcaaacttgaagaacgtgaaaagaatcgtaaattagcacaattattagatgat
ttggaattcaatcaagttattatttttgttaaatcaacagcaagggctaatgaactaaca
aaattattgaatgctagtaatttcccggcaattaccgtacatggtcatatgaaacaagct
gaacgtatcgctcgttataaagcctttaaagattttgaaaaacgtatttgtgtctccact
gatgtcttcggtagaggtattgatattgaacgtattaacttggctatcaattatgattta
tcaaatgaagctgatcaatatttacatcgtgttggtagagctggtagatttggtaccaag
ggtttagctatttctttcgtctcttccaaggaagatgaagaagttttaagtaagattcaa
gaacgttttgatgttaagattgctgaattcccagaagaaggtattgatccatcaacttac
ttgaacaattaa
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