KEGG   Kazachstania africana: KAFR_0F04190
Entry
KAFR_0F04190      CDS       T02487                                 
Symbol
KAFR0F04190
Name
(RefSeq) hypothetical protein
  KO
K12601  superkiller protein 8
Organism
kaf  Kazachstania africana
Pathway
kaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KAFR_0F04190 (KAFR0F04190)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kaf03019]
    KAFR_0F04190 (KAFR0F04190)
Messenger RNA biogenesis [BR:kaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     KAFR_0F04190 (KAFR0F04190)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 ANAPC4_WD40 WD40_CDC20-Fz WDR55 Beta-prop_EML EIF3I Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_RIG_2nd PEP5_VPS11_N Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_EIPR1
Other DBs
NCBI-GeneID: 13884481
NCBI-ProteinID: XP_003958149
UniProt: H2AXB4
LinkDB
Position
6:822926..824110
AA seq 394 aa
MSKVFIPVSNVGKAHDADIYSVKVLKGFTVTASGDGSLKFWSNKKIYQNDFKTLKDDVHV
EFVDATGLHHVDCLTVNDMLGNDALTVNIISTVSFNGIIHFYQFVNENLSTLKKIKLLNP
EEIKIHSFWSSLWVNGNNDQVVSDRLITSDIKGNTNIWKFELYKDETKTEIEPHLTYQGE
ISSNEPVVATCVDASAKRGLIATGFANGTVVVSQLSTLRPLYTFESNSSSTVNSVRSLKF
SPLGNLLAVSNDFGSFGSITLYETEFGEKIGNLSIPTHSGQKLISGTTFAHNGWVFNLSF
NSTGEFLATCGYDSKVRVWDIKLKERVSTLNLSANDIEIEDDIMLHDENGDSTKFPPIFD
VKFINKGIINDTNEGLCCVCMDRSIRWFREAGGN
NT seq 1185 nt   +upstreamnt  +downstreamnt
atgtcgaaggttttcatccctgtttctaacgtcggtaaagcacacgatgctgacatttat
agtgtcaaagtattgaaaggtttcacggtaactgcaagtggtgatggtagtttgaagttc
tggtcaaataagaagatatatcaaaacgatttcaagacattgaaggacgatgtccacgta
gagtttgtcgatgctactggtttgcatcatgtagattgccttacagtgaatgatatgtta
gggaatgatgctttaactgtgaatattatctcaactgtatctttcaatggaataattcat
ttctatcaatttgtaaatgaaaatttatctactttgaagaaaatcaaattactcaatcca
gaagaaattaaaatccattccttctggtcgtccctgtgggtgaatggtaataatgaccag
gttgtttctgataggttaataacgagtgatattaaaggtaacactaatatttggaaattt
gaattatataaagacgaaacaaaaactgaaattgagccacatctaacgtatcaaggtgaa
atatcgtcgaacgagccggtcgttgcaacttgtgtggatgcatcagcaaagagaggtttg
attgccactggatttgcaaatggaacagtggttgtatctcaattgagtactttaaggccg
ttatacacttttgaatccaactcctcgagcactgtcaattcagtaaggtcattgaagttc
tcacctttggggaacctattagcagtttcaaacgattttggttcatttggttcaattaca
ctttacgaaacagaatttggtgaaaagattggtaacctttctattccaacgcattctggt
caaaaattaattagcggtactacttttgcacataacgggtgggtgtttaacctttcgttt
aattctacaggtgaatttttggccacctgtggatacgatagtaaagtcagagtgtgggat
atcaagttaaaggaaagggtatctactttgaatctttctgcaaacgatattgaaatagag
gatgatatcatgctacatgatgagaatggtgattctactaaattcccgccaatttttgat
gttaaattcattaataaaggtattattaacgacacgaacgaaggtttatgttgcgtttgc
atggatagaagtataagatggtttagagaagctggtggtaattga

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