KEGG   Kazachstania africana: KAFR_0K01940
Entry
KAFR_0K01940      CDS       T02487                                 
Symbol
KAFR0K01940
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
kaf  Kazachstania africana
Pathway
kaf03018  RNA degradation
kaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:kaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    KAFR_0K01940 (KAFR0K01940)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KAFR_0K01940 (KAFR0K01940)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kaf03019]
    KAFR_0K01940 (KAFR0K01940)
   03041 Spliceosome [BR:kaf03041]
    KAFR_0K01940 (KAFR0K01940)
Messenger RNA biogenesis [BR:kaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     KAFR_0K01940 (KAFR0K01940)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     KAFR_0K01940 (KAFR0K01940)
Spliceosome [BR:kaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    KAFR_0K01940 (KAFR0K01940)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 13886737
NCBI-ProteinID: XP_003959683
UniProt: H2B1P8
LinkDB
Position
11:400456..401004
AA seq 182 aa
MLPLYLLTNAKGQQMRVELKSGEIIEGELTNVDNWMNLTLRNISEYKNTDGSPQLEVVKS
SEIYLKGIYIKYIKLQDDIINNVKQQINSNMNTGGNKTHRNYNNRNYMSNNQNNRRNTYG
TTGNNMNNRRGYNNASNNVRRGFNQNNQMRRSNNGLGGYVQHNPDVNLGDLAGKSPGQSI
EF
NT seq 549 nt   +upstreamnt  +downstreamnt
atgttgcctttgtacctgttaacaaatgcgaaaggccaacaaatgcgtgttgaattgaag
agcggtgaaataattgaaggtgagctaactaacgttgataactggatgaacctaactctc
cgtaacatcagtgaatataaaaataccgatggatcccctcaacttgaggttgtcaagtct
tcagagatctacctgaaaggtatatacatcaaatacatcaaattacaagatgatattatc
aataacgttaaacaacaaattaatagtaatatgaataccggtggtaataaaactcacaga
aactacaataacaggaattacatgagcaataaccaaaataatagaagaaatacttatgga
actacgggtaataatatgaataatagaaggggttacaacaatgcaagtaataacgtccgt
cgcggattcaatcaaaataatcaaatgagacgtagcaataatggtcttggtggttatgta
caacataatccagacgtcaatttgggtgacctggcaggtaaatccccaggtcaaagcatt
gaattttaa

DBGET integrated database retrieval system