Kaistia sp. 32K: K32_21930
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Entry
K32_21930 CDS
T06998
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kai
Kaistia sp. 32K
Pathway
kai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K32_21930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kai03400
]
K32_21930 (mfd)
Enzymes [BR:
kai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K32_21930 (mfd)
DNA repair and recombination proteins [BR:
kai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K32_21930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCP53576
UniProt:
A0A7R7T658
LinkDB
All DBs
Position
complement(2398920..2402423)
Genome browser
AA seq
1167 aa
AA seq
DB search
MVQFKYIFGRPSTVLSGVPDGFDGKVVADIATLAAREDLPYVLVIARDGNRMADLEQAMR
FFSPGTEVVAVPAWDCMPYDRVSPNTAVVARRMAALSYLAHHQPVKGRALVVLTTVNAAV
QRLPRREQVARQSLSIASGNQLSMDKLTGWLEDNGFLRTSTVREAGEYAVRGGIIDLFAA
GQEEPVRVDFFGDTVDSIRSFDVESQRTIAQRKRLDLVPMSELVLSPQAIAHFRERYVAL
FGATDREDLLYQSVSEGRRYTGVEHWMPLFVDGLDTLFDYVPGAPVVLDHLVEEAIAERF
DDVVDHYDARKSAMGQGQGGVPYRPVPPGELYLTQVEWKAREKLAPLLRMTPFAEPDDTM
VVDLGGRHGRTFAAERTAGDVNVFDAVINHIAGLREKKRVVIASWSDGARDRLAQVLDDH
GLKRVERIEDWTGTEKLAKGVVGLGVLGLEAGFETPDMVVIGEQDILGDRLVRPRKRSKR
ASDFLSEVTGLSEGDIVVHVDHGIGRFSGLKTITAAGAPHDCLEILYHGGDRLYLPVENI
ELLSRYGSEDAEATLDKLGGVAWQARKAKLKQRIRDMAGQLIKVAAARAMRHAEPLAPAD
GLYDEFAARFPYEETEDQLAAIEAVISDLGAGTPMDRLICGDVGFGKTEVALRAAFVAVM
SGKQVAVVVPTTLLSRQHFRTFSNRFAGFPIRVEQASRLVSTKDLAETKKGIKEGQVDIV
VGTHALLGKGIEFKDLGLLIIDEEQHFGVKHKERLKELRADVHVLTLSATPIPRTLQLAL
TGVRELSLITTPPVDRMAVRTFISPFDALVVREALLRERYRGGQSFYVCPRLSDLADRKE
FLEKFVPEVKVAIAHGQMPPTELEDIMTAFYEGAYDVLLSTTIVESGLDIPTANTLIVHR
ADMFGLAQLYQLRGRVGRSKTRAYALFTVPAEKRLTAMADRRLKVLQSLDTLGAGFQLAS
HDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAALRDGGAEEHEADGRWSPQITVG
TPVMLPETYVPDLQLRLSLYRRLGDLDEPEQIDGFGAELIDRFGPLPDEVEHLLKIVYIK
ALCRKANVEKVDAGPKGIVIAFRNSTFANPAGLIRYIGEQGSLAKVRPDQKIVLIRDWEK
PEQRLKGTAVILTQLARMAEEANKKAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggtccagttcaaatacatcttcggccgtccgtcgacggtcctttccggcgttccggat
ggcttcgacggcaaggtcgtggccgacatcgccacgctcgcggcgcgcgaggatctgccc
tacgtcctggtcatcgcccgcgacggcaaccgcatggccgatctcgaacaggcgatgcgc
ttcttctcgccgggcaccgaggtcgtcgccgtgccggcctgggactgcatgccctatgac
cgcgtgtcgccgaacaccgccgtcgtggcgcggcgcatggcggcgctctcctatctcgcg
caccatcagccggtgaagggccgcgcgctcgtcgtgctcaccaccgtcaacgccgccgtg
cagcgcctgccgcgccgcgagcaggtagcgcgccagagcctgtcgatcgccagcggcaac
cagctttcgatggacaagctgaccggctggctcgaggacaacggcttcctgcgcacctcg
accgtgcgcgaggccggcgaatacgccgtgcgcggcggcatcatcgatctcttcgccgcg
ggccaggaggagccggtccgcgtcgacttcttcggcgataccgtcgattcgatccgctcc
ttcgacgtcgagagccagcgcaccatcgcgcagaggaagcggctcgacctcgtgccgatg
agcgagctggtgctgtcgccgcaggcgatcgcccatttccgcgagcgctatgtggcgctg
ttcggcgctaccgatcgcgaggacctgctctaccagtcggtcagcgagggccgccgctat
accggcgtcgagcactggatgccgctgttcgtcgacgggctcgacacgctgttcgactat
gtgcccggcgcgccggtggtgctcgaccatctggtcgaggaggcgatcgccgagcgcttc
gacgacgtcgtcgaccactacgacgcccgcaagagcgccatggggcaggggcagggcggc
gtgccctatcgcccggtaccgcccggcgagctctatctgacgcaggtcgagtggaaggcc
cgcgagaagctggcgccgctgctgcggatgacgcccttcgccgagcccgacgacaccatg
gtggtcgatctcggcggccggcacgggcgcaccttcgcggccgagcgcaccgccggcgac
gtcaacgtcttcgacgcggtcatcaaccatatcgccggcctacgcgagaagaagcgcgtc
gtcatcgcctcctggagcgacggcgcgcgcgatcgcctggcgcaggtgctcgacgatcac
ggcctgaagcgggtcgagcggatcgaggactggacgggcacggagaagctcgccaagggc
gtcgtcggccttggcgtgctcggcctcgaggcgggcttcgaaacgcccgacatggttgtc
atcggcgagcaggacattctgggcgatcgcctcgtccgcccgcgcaagcgctccaagcgc
gcctccgacttcctgagcgaggtgacgggcctctccgagggcgacatcgtcgtccatgtc
gatcacggcatcggtcggttcagcgggctgaagacgatcacggcggccggtgcgccgcat
gactgcctggagatcctctatcacggcggcgaccggctctatctgccggtcgagaacatc
gagctgctgtcgcgctatggatcggaagatgccgaggcgacgctcgacaagctcggcggc
gtcgcctggcaggcgcgcaaggcgaagctgaagcagcgcatccgcgacatggcggggcag
ctgatcaaggtcgcggcggcgcgcgccatgcgccatgccgagcccttggcgccggccgac
ggcctctatgacgagttcgccgcccgcttcccctatgaggagacggaagaccagctggcc
gcgatcgaggctgttatctccgatctcggcgccggcacgccgatggaccgcctgatctgc
ggcgacgtcggcttcggcaagacggaagtggcgctgcgcgccgccttcgtcgcggtgatg
agcggcaagcaggtcgcagtcgtcgtgccgacgacgctgctgtcgcgccagcatttccgg
actttctcgaaccgcttcgccggtttcccgatccgcgtcgagcaggcctcgcgcctcgtc
tcgaccaaggatctggccgagaccaagaagggcatcaaggaaggccaggtcgacatcgtc
gtcggcacgcatgcgctgctcggcaagggcatcgagttcaaagatctcggcctgctgatc
atcgacgaggagcagcatttcggcgtcaagcacaaggagcggctcaaggaactgcgcgcc
gacgtgcatgtgctgacgctctcggcgacgccgatcccgcgcacgctgcaactggcgctg
acgggcgtgcgcgagctgtcgctgatcaccacgccgccggtcgaccgcatggcggtgcgc
accttcatctcgcccttcgacgcgctcgtcgtgcgcgaggcgctgctgcgcgaacgctat
cgcggcggccagagtttctatgtctgcccgcggctctcggacctcgccgaccgcaaggaa
ttcctggaaaaattcgtgccggaggtgaaggtcgcgatcgcgcatggccagatgccgccg
accgagctcgaggacatcatgacggccttctacgagggcgcctatgatgtgctgctctcg
acgacgatcgtcgaatccggcctcgatatcccgaccgccaacacgctgatcgtgcaccgc
gccgacatgttcggcctggcgcagctctaccagctgcgcggtcgcgtcggccgctcgaag
acgcgcgcctatgcgctgttcaccgtgccggccgagaagcggctgacggcgatggcggat
cgccggctcaaggtgctgcagtcgctcgatacgctcggcgccggcttccagctcgcgagc
cacgacctcgacatccgcggcgccggcaacctgctcggcgaggaacagtcgggccacatc
aaggaagtcggcttcgagctctaccagcagatgctggaggaggcagtggccgcactgcgc
gatggcggcgccgaggagcacgaggccgatggccgctggtcgccgcagatcacggtcggc
acgccggtcatgctgccggaaacctatgtgccggacctgcagctccgcctgtcgctctat
cgccgcctcggcgatctcgacgagccggagcagatcgacggtttcggcgcggagctcatt
gatcgctttggcccgctgccggacgaggtcgagcaccttttgaagatcgtctacatcaag
gcgctctgccgcaaggcgaatgtcgagaaggtcgacgccggcccgaagggcatcgtcatc
gccttccgcaactccaccttcgccaacccggccggcctgatccgctacatcggcgagcag
ggcagcctggccaaggtccggcccgaccagaagatcgtgctgatccgcgactgggagaag
cccgagcagcgcctgaagggcacggcggtgatcctgacccagctcgcccgcatggcggaa
gaggccaacaagaaggcggcgtga
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