Kaistia sp. 32K: K32_31800
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Entry
K32_31800 CDS
T06998
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kai
Kaistia sp. 32K
Pathway
kai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K32_31800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kai03021
]
K32_31800 (rpoD)
Transcription machinery [BR:
kai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K32_31800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BCP54563
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All DBs
Position
3408291..3410288
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AA seq
665 aa
AA seq
DB search
MATKVQENEEAQDAQAEPQDGPLLDLSDAAVKRMIKVAKKRGFVTYEELNSVLPSEQVGS
EQIEDILSMLSEMGINVIEADEVEDAEEPTAADADEEAGELAESTGTAVARSSTAKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWKEELA
EGKILLRDIIDLEATYAGPEAKNAPMAGPGGVPFGEGAEDEDAEAPLPPQPDGDGDDEDD
MENNMSLAAMEAELKPKVVETFENVAENYKKLRRLQDQLVEGRLKNETLSPSQERRYKKL
KDDLILEVKSLSLNQNRIDSLVEQLYAINKSLVSSEGKLLRLAESYRVSREEFLREYQGS
ELDPNWLRRVANLGGRGWKDFVTNGKDRIRELRSEIQNLATETGLEIIEYRRIVHMVQKG
EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLA
MPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKMAILPIDAAIQSNLRETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggttcaggaaaacgaagaggcgcaggacgcgcaggccgagccgcaggat
ggtccgcttctggatctctcggatgccgccgtcaaacggatgatcaaggtcgccaagaag
cgcggctttgtcacctatgaggaactgaattccgtcctcccctccgagcaggtcggctcg
gagcagatcgaggacattctctcgatgctctccgaaatgggcatcaatgtgatcgaggcc
gacgaggtcgaggacgcggaagaaccgaccgcggccgacgccgacgaggaagcgggcgag
ctcgccgaatcgaccggcaccgccgttgcccgctcgtcgacggccaaggagccgaccgac
cgcaccgacgaccccgtccgcatgtatctgcgcgagatgggctcggtcgaactgctgtcg
cgcgagggcgaaatcgccatcgccaagcggatcgaggccggccgcgagacgatgatcgcc
gggctctgcgagagccccctcaccttccaggccatcatcatctggaaggaggagcttgcc
gagggcaagatcctgctgcgcgacatcatcgacctcgaggcgacctatgccggtcccgag
gcgaagaacgccccgatggctggtccgggcggcgtgccgttcggcgaaggcgccgaggac
gaggacgccgaggctcccctgccgccgcagcccgatggcgacggcgacgacgaagacgac
atggaaaacaacatgtcgctcgccgccatggaggccgagctgaagccgaaggtcgtcgag
accttcgagaacgtcgccgagaattacaagaagctgcgccgcctgcaggaccagctggtc
gagggccgcctcaagaacgagacgctatcgccctcgcaggagcgccgctacaagaagctg
aaggacgacctgatcctcgaggtcaagtcgctctcgctgaaccagaaccgcatcgattcg
ctggtcgagcagctctacgccatcaacaagagcctcgtcagctccgagggcaagctgctg
cgtctggccgagagctatcgcgtctcgcgcgaagagttcctgcgcgagtaccagggctcc
gagctcgacccgaactggctgcgtcgcgtcgccaatctcggcggccgcggctggaaggac
ttcgtcaccaacggcaaggaccggatccgcgagctgcgcagcgagatccagaacctcgcc
accgagacgggcctggagatcatcgagtatcgccgcatcgtgcacatggtgcagaagggc
gagaaggaagcccgtcaggccaagaaggaaatggtcgaggcgaacctccgcctcgtcatc
tcgatcgccaagaagtacaccaatcgcggcctgcagttcctggacctgatccaggaaggc
aatatcggcctgatgaaggcggtcgataagttcgaataccgccgcggctacaagttctcg
acctacgccacctggtggatccgccaggcgatcacccgctcgatcgccgaccaggcccgc
acgatccgtatcccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagagctggccgagaagctggcc
atgccgctcgagaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
acgccgatcggcgacgaggaggattcgcatctcggtgacttcatcgaggacaagatggcg
atcctgccgatcgacgcggcgatccagtcgaacctgcgcgagacgaccacgcgcgtcttg
gcatcgctgacgccgcgtgaagaacgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctggaagaagtcggccagcagttctcggtgacgcgcgagcgtatccgc
cagatcgaggcgaaggcgctgcgcaagctcaagcacccgagccgctcgcgcaagctgcgc
tcgttcctggacaactga
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