Ketobacter alkanivorans: Kalk_02985
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Entry
Kalk_02985 CDS
T05294
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Kalk_02985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kak03400
]
Kalk_02985
Enzymes [BR:
kak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kalk_02985
DNA repair and recombination proteins [BR:
kak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Kalk_02985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUM11451
UniProt:
A0A2K9LH16
LinkDB
All DBs
Position
744098..747568
Genome browser
AA seq
1156 aa
AA seq
DB search
MTIDFLDNFPSKPGDQRIWSNLKGSGQAWALAQSARHHKGLILVITPDTQSALQLELEIP
FYADKNLELLTFPDWETLPYDSFSPHQDIISQRLATLNRLPTLTQGILIVPVSTLMHRIA
PPSFLASQTLLLDIGQKFELHLVRKQLEQAGYRAVDTVLDHGEYAVRGAIMDLFPMGSQV
PYRIELFDDEIDTLRSFDPETQRSIDKVEQVRLLPAKEFPLHDQAISGFKERFKQQFDAD
PRSCPVYQDISDGITSAGIEYYLPLFFKGTATLFDYLPDHTLAFTPETLQSSADHFWTDC
NNRYEELRYDRMRPILPPANLFLASDELNRALKELPRVSVRSGLGEVDKDHHTDLPLSTP
PDLPINAKATNPLMHVEAYCMGAKEQQRRILFVAESAGRRDTLLDLLQRIRIKPKPAERW
ADFLAEKKAAVMIAVAPLSAGLVLDDPSVCVITESQLFGNRVMQRRRRKRGDDNAENVIR
NLTELNPNDPVVHIDHGVGRYKGLQTLEIDGQKQEFLTLEYANEAKLYVPVSSLHLISRY
SGASDSMAPLHRLGTDQWTKEKRKAAEQIHDTAAELLNIYARRAAKPGHAFDLNRQDYEA
FCEGFPFEETPDQQAAIDAVIADMTSDRPTDRLVCGDVGFGKTEVAMRAAFVAVQTGKQV
AILVPTTLLAQQHYETFKDRFSDWPVQVEVLSRFRTGKEQTKALKLIEDGKVDIVVGTHK
LLQESVQFKSLGLIIVDEEHRFGVRHKERLKEMRADVDMLTLTATPIPRTLNMAMSGVRD
MSIIATPPAKRLSIKTFVREDNKAVTKEAILRELLRGGQVYFLHNEVKSIDRRAEEIQAL
VPEARIIVAHGQMRERELEQVMSDFYHKRYNLLMCTTIIETGIDVPSANTIIIDRADKFG
LAQLHQLRGRVGRSHHQAYAYMLTPNPKAITADARKRLEAIAEAHDLGAGFTLASHDLEI
RGAGELLGEEQSGNMTSIGFSLYMELLEDAVKAIKEGKTPNLDKPLKHGAEINLRIPALI
TEDYVRDVHTRLITYKRISNARDDDQLDELRVELVDRFGSLPESTKNLFQLTKIKLRAQS
LGLSKVDAGPRGGRVEFGPDTQVHPLTIVKMVQIQPQFYKLDGADKLKFAIETETAEQRL
DMINELLQKLSAGPKG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgattttcttgataattttcccagcaaacccggcgatcaacggatttggagc
aacctgaaaggcagtgggcaggcgtgggcactggcacagtccgcccgccaccacaaaggg
ttgattctggtgatcacaccggacacccagagcgccctgcagctggaactggaaatcccc
ttctacgccgataaaaatctggagctgctgacgtttccagactgggaaacgctgccctat
gacagtttctccccccaccaggacataatttcgcagcggctggcaacgctgaatcggctg
ccaacactgactcagggcattcttattgtgccggtttccacactcatgcaccgcatcgcg
ccgccgtcgtttcttgcgagccagaccctgctgctggacataggccagaagtttgagctg
cacctggtcaggaaacaactggagcaggctggttatcgtgccgttgacaccgtcttggat
catggcgaatacgccgttcgcggcgccatcatggatctgtttcccatgggcagccaagtg
ccctaccgaattgagttatttgacgacgaaatcgacaccctgcgctccttcgaccccgag
actcagcgctccatcgataaagttgagcaagtccgcctgctgccagccaaggaattcccc
ctccacgatcaagccatcagcggattcaaagagcgttttaaacaacagttcgacgcagat
ccccgcagctgccctgtgtatcaggacataagcgatggcattaccagtgccggtattgag
tactatctgcctttgttctttaaaggtactgccacgctgtttgactatttaccagaccat
acgctggccttcacaccggaaacactgcaaagcagcgccgaccatttttggactgactgc
aacaatcgctatgaagagctgcgctacgaccgtatgcgcccgatcctgccgcctgcaaac
ctgtttctggccagcgatgaactgaaccgtgccctcaaagaattgccaagagtgagcgta
cgcagcggcctgggggaggtagataaagatcaccacaccgacctgcccttgagcacccct
cccgatctgcccatcaacgccaaagccaccaatccgttgatgcatgtggaagcctattgc
atgggggccaaggagcaacagcgcaggattctgttcgtagcggaatctgccggccgacgc
gacaccctgctggatctgctgcaacgcatccgcatcaagccgaaacccgctgaacggtgg
gccgactttctggcagagaaaaaagcagccgtgatgatcgctgtggcacctttaagtgcc
gggctggtactggatgatcccagtgtctgcgtgatcactgaatcccagctgtttggcaac
cgtgtcatgcagcgccgtcgtcgcaaacgtggcgatgacaacgccgaaaacgtaatccgc
aacctgaccgagttaaatcccaacgacccggtagtacacatagatcacggtgtcggccgc
tacaagggcttgcagacactggaaatcgacggccagaaacaggagttcctgaccctcgaa
tacgccaatgaagccaaactctacgtgccggtgtcgtctctgcatctgatcagccgctat
tctggtgccagcgacagcatggcacccttgcatcgactgggtaccgatcagtggaccaag
gaaaaacgcaaagcagccgaacagattcacgacaccgcggctgaactgctgaatatttac
gctcgccgagccgccaaacccggccatgcattcgaccttaaccgccaggattacgaagcc
ttttgtgaaggttttccgtttgaagaaaccccggatcaacaggccgccatcgacgccgtg
atcgcagacatgacctccgatcgacctactgaccgtctggtgtgtggcgatgtgggcttt
ggtaaaacggaagtggccatgcgcgctgccttcgtcgccgtacagaccggcaaacaagtc
gccattctggtgcccaccactctgctggcgcaacagcattacgagaccttcaaggatcgc
ttttccgactggccagtacaggttgaagtgttgtctcgattccgtaccggtaaagagcaa
accaaagccctcaaactgattgaagacggcaaagtagatatcgtggtgggtacccacaag
ctactgcaggaaagcgttcaattcaaaagtctgggccttatcatcgtggacgaagaacac
cgttttggcgtgcgtcacaaagagcgcctgaaggaaatgcgcgccgatgtggacatgctc
accctgaccgccacccccattccccgtacgctgaatatggcgatgtctggagtgcgggac
atgtccatcatcgcgacaccaccggccaagcgactttccatcaaaacctttgtgcgggaa
gacaacaaagcagtcaccaaagaagccatcctgcgtgaactgttgcgaggggggcaagtg
tattttctccacaacgaggtcaaatccattgatcgccgcgccgaagaaattcaggcgctg
gtgccggaagcccgcatcatcgtagctcacggccaaatgcgggagcgggagctggaacag
gtcatgtccgacttctaccacaagcgttacaacctgcttatgtgcaccaccatcatcgag
accggtatcgacgtaccttcggccaataccatcatcatcgaccgggctgacaaattcggg
ctggctcaactgcaccagctacgaggccgcgtgggccgatctcaccaccaggcttatgcc
tacatgctcacccccaaccccaaagccatcaccgccgatgcccgcaagcgtctggaggcc
attgccgaagcccatgatctgggagcgggtttcacgctggccagtcacgatcttgagatt
cgtggtgccggtgagctgctgggagaagagcaaagcggcaacatgaccagtatcggtttc
tccctctatatggagctgctggaagacgctgtcaaagcgattaaagaaggcaaaaccccg
aatctggacaaaccgcttaagcatggtgccgaaatcaatctacgcatccccgccctgatc
accgaggattacgtgcgggatgtacacaccaggttgattacgtataaacgcatatccaac
gctcgggatgatgatcaactggacgagttgcgggttgaactggtggaccgatttggctcg
ctgccggaatccaccaaaaatctgttccaactgaccaaaatcaagctgcgtgcgcaatcg
cttggccttagcaaagtggatgcaggcccaaggggcggtcgggtcgagtttgggccggac
actcaggttcacccactgaccatcgtaaaaatggtacaaattcagccccagttctataaa
ctggacggtgccgataagctaaaattcgccatagagaccgaaaccgccgagcagcggctg
gacatgattaacgaactgctgcaaaaactcagcgctggccccaaagggtaa
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