Ketobacter alkanivorans: Kalk_06085
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Entry
Kalk_06085 CDS
T05294
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kalk_06085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kak03019
]
Kalk_06085
Enzymes [BR:
kak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kalk_06085
Messenger RNA biogenesis [BR:
kak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kalk_06085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Beta_propel
Utp25_C
AAA_22
Psb28
Motif
Other DBs
NCBI-ProteinID:
AUM12016
UniProt:
A0A2K9LI21
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All DBs
Position
1435423..1436721
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AA seq
432 aa
AA seq
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MTDTVSKEEQPTLRFKDLKLEPSLQQGIDDLGFEFATPIQALSLPLSLQGKDVIGKAQTG
TGKTAAFLITVINRLLKEPEQEERFNGEPRALILAPTRELAMQIEKDAQTLVKHTKLGLL
SIVGGMDYQKQQRRLQNEIIDIVVGTPGRLIDFVRSKDLFLSETEILVIDEADRMLDMGF
IPDVKRLIRETPFKEYRQTLMFSATFTQDIMNLSSSWTINAQQLEVESDTVAADTVDQKV
YIVTTDEKFTLLYNLITQNQLERVMIFANRRDETRDLTHKLRDYGIKCATLSGDVPQHKR
IKVLEGFREGSIRVMVATDVAGRGIHIEGISHVVNYSLPEDPEDYVHRIGRTGRAGKTGT
SVSFACEEDAFQLPAIEQLLGLKLDCSQPEAELLQEIPKPEISPEREAERKSHQHEQRRR
RTRRPQRRSSSN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacggacaccgttagcaaagaagaacagcccactctgcgctttaaagatcttaaactg
gaaccctccctgcaacagggtatcgacgatctgggatttgaattcgccacaccgatacag
gcgctctcactgccgctgagcttgcaaggcaaggatgtgatcggtaaggcccaaaccggc
accggcaaaacggccgcgtttctgattacagtcatcaaccgcctgctgaaagagcccgag
caggaggaacgcttcaacggcgaaccccgcgcactgatcctggcccccactcgggagctg
gccatgcaaatagaaaaagatgcccaaaccctggttaaacacaccaagctgggcctgttg
agcattgttggcggcatggattatcagaagcagcaacgacgcctgcaaaatgaaatcatc
gacatcgtagtaggcaccccagggcgcttgatcgactttgtccgcagcaaagacctgttt
ctcagcgaaaccgaaatcctcgtgatcgacgaagccgatcgcatgctggacatgggtttt
attcctgacgtgaaacgactgatacgagaaacaccgtttaaggaataccgccagacattg
atgttcagcgctacctttacccaagacatcatgaacctttcgtccagctggaccattaac
gctcaacaactggaagtggaatccgacaccgttgccgccgataccgtcgaccagaaagtg
tatatcgtcaccaccgatgaaaagttcaccctgctgtacaacctgatcacacaaaatcag
ctggagcgggtcatgatctttgccaaccggcgtgatgaaaccagggacttgacccacaag
ctcagggattatggcatcaaatgcgccaccctctcgggcgacgttccccagcacaaacgc
attaaagtgctggagggctttcgtgagggcagcatccgcgtcatggtggccactgatgtg
gcaggcagaggtatacacattgaaggcatcagtcatgtagtgaactattcactgccggaa
gatcctgaagattatgtacatcgaattggccgcaccggccgcgcaggcaaaaccggcacc
agtgttagtttcgcgtgcgaagaagacgctttccaattgcccgccatcgaacagctgttg
ggtttaaaactcgattgctcacagcccgaagccgaactgttgcaagagattccaaagccg
gaaatttcaccggaacgtgaagccgaacgcaaaagccatcaacatgaacagcgacggcgc
cgcacccgacgcccacagcgtcgttccagcagtaattag
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