Ketobacter alkanivorans: Kalk_06375
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Entry
Kalk_06375 CDS
T05294
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Kalk_06375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kak03021
]
Kalk_06375 (rpoC)
03400 DNA repair and recombination proteins [BR:
kak03400
]
Kalk_06375 (rpoC)
Enzymes [BR:
kak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Kalk_06375 (rpoC)
Transcription machinery [BR:
kak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Kalk_06375 (rpoC)
DNA repair and recombination proteins [BR:
kak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Kalk_06375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AUM12070
UniProt:
A0A2K9LIJ8
LinkDB
All DBs
Position
complement(1483146..1487354)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKDLLNLLKAQGQDAEFDRIRIALASPEMIRAWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVTDPGTTTLERGQMLTDEQYYEALEEFGDEFDASM
GAEAVQKLLLDMDLQQEIRELREELPNVNSETKIKKITKRLKLMEAFQESGNDPTWMILS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHECGLPKKMALELFKPFIFAKLEARGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCVAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPTQDVVLGLYYISRERINAKGEGMVFADTKEVSRALVNS
AVTVHTRIKVRVTETVKQEDGSLETRTFIADTTAGRCMLWDVLPSGLPFELINQNMTKKT
VSRLINACYRRLGIKSTVIFADKLMYLGFHQATLSGSSVGINDMMIPEEKARIISEAEDE
VREIEDQFASGLVTQGERYNKVIDIWSRTNDMVAKAMMERLSVDTVIDRDGNEVPQKSFN
SIFIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTDQGIIMTPLIEGGDVVEPLGERVL
GRVVAQDLYKPGTEELLAPAGTLIDEKWVEMLEAEAVDEVICRSPIACDTRYGVCRACYG
RDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVSNVQVKNQGTVRL
HNIKYVEQENGNLVTVSRSAELAIADAKGRERERYKIPYGSVVSVKDGASVDAGQVIAQW
DPHTHPVITESAGRVSFADFDEGLSVKQTTDDLTGLTNYEILDAKDRPASGKDKRPVVRL
VGEDNELVTMPGSDIPVQYYLPAGSIVQLENGSKVGVGDVVARIPQESSKTRDITGGLPR
VADLFEARKPKESSILAEKTGVVSFGKETKGKVRLMITPDDSGDVYEELIPKWRQLNIFE
GERVEQGEVISDGPSNPHDILRLKGVNAVASYIVNEVQDVYRLQGVGINDKHIEVIVRQM
LRKVIITDSNDSSFIKGEQAELARVLDENEVLDKESKFGAKYDRELLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKIDDLRGLKENVVVGRLIPAGTGFAYHAERRRQREQADVLQ
VPEFTADDAEQALSEALNSPEE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttactgaacctgctaaaagcacagggacaagacgcagaattcgatcgtatt
cgtatcgcattggcgtccccagaaatgattcgcgcttggtcttttggtgaagttaaaaag
cctgagaccatcaactaccgtacgttcaagcctgagcgcgatggtttgttttgcgcgcga
atctttggtcctatcaaggattacgaatgcttgtgtggtaagtacaagcgtttaaagcac
cgtggtgtgatatgtgagaagtgtggcgtcgaagtgacgctgtctaaagtgcgtcgtgat
cgtatggggcacattgagctggctagcccggttgctcatatatggtttttgaaatcgctg
ccgtcccgtattggtttgttgctggatatgactctgcgcgacatcgagcgcgtactgtat
tttgagtcatttgtagtaactgatcctggtactaccactcttgagcgtggtcagatgctg
acggatgagcaatattacgaagcgctggaagagttcggagacgaatttgatgccagcatg
ggtgctgaagcagttcagaagttgctgttggacatggatctgcagcaggaaatccgtgaa
ttgcgtgaagagctgcccaacgttaactccgagaccaagatcaaaaagatcaccaagcgt
ctgaagttgatggaagcattccaagagtccggcaatgatcctacttggatgattctgagt
gtgctgccagtgttgccgccagatcttcgtcctctggtgcctctggatggcggtcgtttt
gcgacctccgacctgaatgatttgtatcgtcgggtaattaaccgtaataaccgtctcaag
cgtctgctggacttgaatgcgcctgacattatcgtgcgcaacgagaagcgcatgctgcag
gaagcagttgatgctctgcttgataacggtcgtcgtggtcgtgcgatcactggttccaac
aagcgtcctttgaagtctttggctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgtgttgattattccggtcgatcggtaatcgtggtaggacctacc
ctaaaactgcatgagtgcggtctacccaagaaaatggctcttgagctatttaagcctttt
atctttgccaaattggaagctcgcggccttgcgacaaccataaaagcggccaagaaaatg
gttgagcgcgaaaccgcagaagtatgggatatccttgctgaagttattcgcgagcatccc
gttatgctgaaccgtgcaccaactctgcaccgtttgggcattcaggcatttgaacctcaa
ctgattgagggtaaggctatccagcttcatccgctggtgtgtgtggcttataacgccgac
ttcgacggtgaccagatggcggtacacgtaccgcttactttggaagctcagctggaagca
cgtgcgctgatgatgtccaccaataacatcctgtctccagcgaatggtgagccaatcatc
gttcctacccaggacgttgtattggggctctattacatcagccgtgagcgtattaacgcc
aaaggcgaaggcatggtgtttgcggataccaaagaagtgtctcgcgccttggttaacagc
gctgtcaccgtccacacccgcattaaagtgcgtgttaccgagaccgttaagcaagaagat
ggcagccttgaaacgcgcacctttatagctgataccacagcgggtcgttgtatgttgtgg
gatgtgcttccttcaggattgccgtttgagttgatcaaccagaacatgaccaagaaaacg
gtatcgcggctgattaatgcctgctaccgccgcttggggatcaagtctacagtaattttt
gcagataaattgatgtacctaggtttccatcaggcgaccttgtctggctcatctgttggc
atcaacgacatgatgattcctgaggaaaaagctcgcatcatatctgaagctgaagacgaa
gtgcgtgagatcgaagaccagtttgcctccggtctggttacccagggcgagcggtacaac
aaggttatcgatatttggtctcgtaccaacgatatggtagccaaagccatgatggagcgc
ctctcagttgatacggttatcgaccgtgatggcaatgaagttccacagaagtccttcaac
tctatctttatcatggccgattccggcgcgaggggctcgcaagcccagattcgtcagttg
gcgggtatgcgtggtctgatggcgaagccggacggctctatcatcgagacgcctattacc
gctaacttccgtgagggtttgaacgtacttcagtactttatttcgactcacggtgctcgt
aaaggtcttgccgatacagcactcaaaacagcgaactcaggatacctaactcgtcgcttg
gttgatgtggcccaggatctggtagtaactgaagacgattgcggaaccgaccaaggcatt
atcatgacgcctctgattgaaggcggcgatgtagttgagcccttgggtgagcgcgtattg
ggtcgtgttgttgcgcaggacttgtataagcccggcaccgaagagctattggctccagcc
ggtacgctgattgatgagaaatgggttgagatgctggaagccgaggcggttgacgaggtt
atctgtcgctctccaatcgcatgtgacacccgttacggtgtgtgtcgagcctgttatggt
cgcgatctggctcgaggccatttggttaacatcggtgaagcggtaggtgttattgccgct
cagtcgatcggtgagcctggtactcagctcaccatgcgtaccttccacatcggtggtgcg
gcatcgcgaagctctgcggtgagcaacgtgcaggttaaaaaccagggtactgttcgactg
cacaacatcaagtatgtagagcaggagaatggaaacctcgtaacggtatcccgttcagcg
gaactggctattgccgatgcgaaggggcgtgagcgtgagcgctacaaaatcccatacggg
tctgtagtgtcagttaaggatggtgcatccgttgatgcgggccaggttatcgcgcagtgg
gatcctcacactcacccggttattaccgagtcggctggtcgagtgagctttgctgatttc
gacgaaggtctctccgttaagcaaacaacggacgatctcacaggtctgaccaattacgag
attttggacgcgaaagaccgtcctgcatctggcaaagacaagcgacctgttgttcgcctg
gtaggtgaagacaatgagctggtcactatgcctggcagtgacattcctgttcaatattac
ctgcctgcaggttctatagttcagttagagaatggctctaaggtgggtgtcggtgacgtt
gttgcccgtatcccgcaggaaagctcgaaaactcgcgacatcaccggtggtttgcctcgt
gttgccgacctgttcgaagccagaaagccgaaagagtcttccatcttggcagaaaagacc
ggtgtagtttcattcggtaaggaaaccaagggtaaagtccgactgatgattacccctgac
gacagcggagacgtctacgaagagttgattcccaagtggcgtcagctgaacatcttcgaa
ggcgagcgtgttgagcaaggcgaagtaatttccgatggcccatccaatccgcacgatata
ttgcgtttgaagggtgttaacgctgttgcaagttacatcgtaaatgaagttcaggacgtt
tatcgactccagggcgtaggcatcaacgacaagcatattgaagttatcgtgcgtcagatg
ctgcgtaaggtcatcattaccgattccaacgattcctcgttcattaagggggagcaggcg
gagttggcccgggtgctggatgaaaatgaagtgctggataaagaaagtaagttcggtgcc
aagtacgatagagaattgctgggtatcaccaaggcgtctctgtcgacggaatcgttcatt
tcagcagcctctttccaggagacaactcgtgtcttgaccgaagccgcagtgaccggaaag
atcgacgatctgcgcggtctgaaggaaaacgttgtggtgggtcgtctgataccggccggt
accggttttgcgtaccacgccgagcgacgtcgtcagcgcgagcaagctgatgtgttgcaa
gtgcctgaattcacagcagatgatgctgaacaggcgctgagcgaagcattaaactcgccg
gaggagtag
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integrated database retrieval system
