Ketobacter alkanivorans: Kalk_16385
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Entry
Kalk_16385 CDS
T05294
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kalk_16385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kak03019
]
Kalk_16385
03009 Ribosome biogenesis [BR:
kak03009
]
Kalk_16385
Enzymes [BR:
kak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kalk_16385
Messenger RNA biogenesis [BR:
kak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kalk_16385
Ribosome biogenesis [BR:
kak03009
]
Prokaryotic type
rRNA helicases
Kalk_16385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Nairovirus_Gn
Motif
Other DBs
NCBI-ProteinID:
AUM13907
UniProt:
A0A2K9LNU5
LinkDB
All DBs
Position
complement(3860479..3862428)
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AA seq
649 aa
AA seq
DB search
MSDTEQTTSFEQLGMPDFVLKTLSELGYESPSPIQAASIPVFMSGADFIGQAQTGTGKTA
AFALPLLAKLDDDSKKPQALIMTPTRELAIQVAEAFQRYARYRKGFRIAPIYGGQDFRPQ
LNLLKQGVQVVVGTPGRLLDHLRRGTLDISEVKTLVLDEADEMLRMGFIDDVEDILSHCS
GEQQTALFSATMPAPIKRIADKYLKNPQHVNIKAKTATVERIDQSYWLVDGRQKPEALRR
YLETREVDAVIVFTRTREGASEVAEKVNAWGYRAEAIHGAISQSQREKTIIGLKKNRFDI
LVATDVAARGLDVDRFSHVVNYDIPHDSESYVHRIGRTGRAGRSGEAVLFVTHRENRLLQ
TIERHTKQKITRAQIPNNDVVLQQRVERFKQQVAQEAAKTPSALIQSVVEQCCHDLEIEP
ELLAAALINMLHNDHPLEPKEEIKQARESKRERNDGERGERGQSRRGELREDESPIDITP
SQLQEFPDVEMERFRIEVGRSGGVTPRDIVGAIANEAGIESNYIGDIILRNEFSTVDLPS
GMPKELFSQMKKIRVRGTPIRITRFGKESPDAAPASSRPRRDSGKPSSKSGGKGKFGDKP
AFGDKKKFGDKKKFGDKKSFGDKKPFADKARSGDQPPAKKGGYKKKPKA
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccgaacaaaccaccagctttgaacagctgggtatgcccgatttcgttttg
aaaaccctgagcgagctgggttacgaatcgccttcgcctatccaggcagccagtatcccg
gtgttcatgagcggtgcggactttattgggcaggcgcaaaccggcaccggtaaaacagcg
gcctttgctctgccgctgctggccaaactcgatgacgacagcaaaaagccgcaagcgctg
atcatgacgcctacccgtgagctggctattcaagtggcagaagcctttcagcgctatgcc
cgctatcgcaaaggtttccgtattgccccgatctacggcggccaggatttccgtcctcag
ctcaacttgttaaagcaaggggtgcaagtagtcgttggcacacccggacgtctgctggat
cacctgcgtcgcggcaccctggatatcagtgaagtaaaaacactggtgctggacgaagcc
gacgaaatgctgcgcatgggctttatcgacgacgtagaagacattttgagccattgctct
ggtgagcagcagaccgccctgttttctgccaccatgcctgcccccatcaaacgtattgct
gataagtacctgaaaaatcctcagcatgtgaacatcaaagccaaaaccgccacggttgag
cgcattgaccaaagctactggctggtggatggccgccaaaagccggaggccctgcgccgt
tacctggaaacccgtgaagtggacgcggtgattgtgtttacacgcacccgtgaaggtgcc
agcgaagtagccgaaaaagtgaacgcctggggctaccgcgccgaagccattcacggtgcc
atcagccagagccagcgagaaaaaaccatcattggcctgaaaaagaaccgtttcgacatt
ctggtggcaaccgatgtggcggctcgaggcctggatgtggatcgcttcagtcacgtggtg
aactacgacatcccccacgacagcgaatcctacgtacaccgcattggccgaactggccgt
gccggacgcagcggtgaagccgtattgtttgtaacccatcgcgaaaaccgcttgctgcaa
accattgagcgccacaccaaacagaagatcacccgtgcccagatccccaacaacgatgtt
gtgttgcaacagcgggttgagcgattcaagcagcaggtggctcaagaggccgccaagaca
ccatcagccctgattcaatcggtggtagagcaatgctgccacgacttggaaatagagcca
gaactgctggccgccgcgcttatcaacatgctgcacaacgatcatcctctggagcccaaa
gaagagatcaagcaagcccgcgaaagcaaacgcgagcgcaacgatggagaaaggggagaa
agaggccaaagtcggcgcggcgaactgcgtgaagatgaatcgcctatcgacatcaccccc
agccaactgcaagagttcccggatgtggaaatggaacgtttccgtattgaagtgggccgc
agtggcggtgttaccccacgggatatcgtgggcgctatcgccaacgaagcgggcatcgaa
agcaactacatcggcgacatcatcctgcgcaatgaattctctacggtggacttgccctcc
ggcatgccgaaagagctgttcagccagatgaagaaaatccgtgtacgtggcacccccatt
cgcattacgcgctttggcaaagaaagccctgacgccgccccagccagcagccgaccacga
agagattcaggtaagccttcttccaaaagtggtggcaagggtaagttcggtgacaaaccg
gcttttggcgacaaaaagaaattcggcgacaagaagaagtttggcgataaaaaatccttt
ggcgacaagaagccgtttgcggacaaagctcgctccggcgatcaacctcctgcgaaaaaa
ggcggatacaagaagaagcctaaggcttaa
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