Ketobacter alkanivorans: Kalk_16785
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Entry
Kalk_16785 CDS
T05294
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kak
Ketobacter alkanivorans
Pathway
kak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Kalk_16785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kak03021
]
Kalk_16785
Transcription machinery [BR:
kak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Kalk_16785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
DUF1366
YL1
Motif
Other DBs
NCBI-ProteinID:
AUM13983
UniProt:
A0A2K9LNY7
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Position
complement(3944013..3945872)
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AA seq
619 aa
AA seq
DB search
MTSNTAQQKSQLKQLITKGKEQGFLTYAEVNDHLPADITDPDQIEDIIGMINDMGIPVHE
VAPETDELLLNDNANSTDEDAAEEAAAALASVESEPGRTTDPVRMYMREMGTVELLTREG
EIVIAKRIEEGIREVMHALAYWPGCIDAVLSEYRRVTENEEGRLSEVLSGFISDVDDIAA
PTPIQDKKPEAASDSDDDDEDDDSDDDDEDEVSNEIDPELAKEQFGELESLYKKAEAAIA
KHGRESKRAETALNKLADHFVTFKLVPRLFDMVESEIRDTLVAIRASERTIMNNCIRLAK
MPRKEFIKSFPGNEVDLEWIDPHIAAGKAYSEGLANVRPDVLRAQRRMVQLQEHIGLTIP
EIKEVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGR
EPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDATIDSPVDSAT
IEGLQEATREVLAGLTAREAKVLSMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDSEN
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaataccgcacagcaaaagtcccagctaaaacaactaattaccaagggaaag
gagcaaggcttcctgacctacgccgaggtgaacgatcacctcccggcagacatcaccgat
ccagatcagatcgaagatatcatcggcatgatcaacgacatgggtattccagtccacgaa
gtggcaccggaaaccgatgaattgttgctcaacgacaacgccaacagcaccgacgaggac
gcagctgaagaagccgccgccgcgctggcctctgttgaaagcgagccaggcagaaccact
gaccccgtgcgcatgtacatgcgtgagatgggcacagtcgaactgctgacccgtgaaggc
gaaatcgtgatcgccaagcgtatcgaagaaggcattcgagaagtcatgcatgccctggcc
tactggcccggctgtattgatgccgtgctgtctgaatatcgccgcgttaccgagaacgaa
gaaggcagactgtctgaagtgctgtctggattcatctctgacgttgacgacatcgccgcc
cctacccccatccaggacaaaaagcctgaagcggccagcgacagcgatgatgatgacgaa
gacgacgatagcgatgatgatgacgaagatgaagtcagcaacgagatcgacccggagcta
gcgaaagagcagtttggtgaactggagtccctttacaaaaaagcggaagccgccatcgcc
aaacatggccgcgagtccaaacgcgccgaaaccgccctgaacaaactggcagaccatttt
gttaccttcaaactggtaccccgtctgttcgacatggttgaaagtgaaattcgtgacact
ctggtcgccatccgcgcctccgaacgcactatcatgaacaactgtatccgtctggccaaa
atgccacggaaagagttcattaaaagcttcccaggcaatgaagttgacctggagtggatc
gaccctcacatcgctgcaggcaaagcctactccgaagggctcgccaatgtgcgccctgac
gtactgcgggcgcaacgccgtatggtacagcttcaagagcacatcggcctgaccattcct
gagatcaaggaagtcaatcgccgcatgtctatcggtgaagccaaggctcgccgcgccaag
aaggaaatggtagaggccaacctgcgtctggttatctccatagccaaaaaatacaccaac
cgtggattgcagttcctcgatctgattcaggaaggcaacatcggcttgatgaaagcggta
gacaagttcgaataccgtcgtggttacaagttctccacctatgctacctggtggattcgt
caggccatcacccgctccattgcggaccaggctcgcaccattcgtattccggtgcacatg
atcgaaaccatcaacaagctgaaccgggtatcccgccagatgctgcaggaaatgggccgc
gagcccacccctgaagaattaggtgtgcgcctggagatgccggaagacaaggtacgtaaa
gttctcaaaatcgcgaaagagcctatctccatggaaacccccatcggtgatgacgaagac
tcgcatttgggtgactttatcgaggatgccaccattgattcgccagtggattcggcaact
atcgaaggcctgcaggaagcaacccgcgaagtactggccggcctcaccgcccgtgaagcc
aaggtactgagcatgcgcttcggcatcgacatgaacaccgaccacactttggaagaagtg
ggcaaacagtttgatgtaacccgtgaacggattcgtcagatcgaagccaaagcactgcgt
aaactgcggcaccccagccgctccgaacacttgcgcagcttcctggacagcgaaaactaa
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