Ketobacter alkanivorans: Kalk_20260
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Entry
Kalk_20260 CDS
T05294
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kalk_20260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kak03019
]
Kalk_20260
03009 Ribosome biogenesis [BR:
kak03009
]
Kalk_20260
Enzymes [BR:
kak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Kalk_20260
Messenger RNA biogenesis [BR:
kak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Kalk_20260
Ribosome biogenesis [BR:
kak03009
]
Prokaryotic type
rRNA processing factors
Kalk_20260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUM14619
UniProt:
A0A2K9LQI5
LinkDB
All DBs
Position
complement(4725892..4728729)
Genome browser
AA seq
945 aa
AA seq
DB search
MKRMLINATHSEELRVALVDGQRLYDLDIEHRTREQKKSNIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFVKNPKDIQGRFTIKDVIKEGQEVILQVGKEERGNKGAALSTF
ISLAGRYLVLMPNNPRAGGISRRIDGDERAALRDVMNGLNIPQDMGVIIRTAGIGRSVAE
LQWDLDYLLTLWTSISEASEKRSAPFLIYQESNVIIRAVRDYLRQDIGEVLIDTKEVYEE
ALTFVRQVMPQYENKIKLYTDNIPLFNRYQIESQIETAFEREVKLPSGGSIVIDPTEALV
SIDINSSKATKGADIEETALMTNLEAADEIARQLRLRDIGGLIVVDFIDMNANRNQREVE
NRMRDALEVDRARIQVGRISRFGLMELSRQRLRPSLGETSGHICPRCSGVGFIRDLHSLS
LNIMRLIEEEALKENSGEIHAKVPVNVATYLLNEKRDNIVAIESRNKVRVLILPSPNLET
PHYEVNRIRSDQVEGEGIASYDLIDAADELEEDLLAPGESPIHRQEEAAVQMIQPNTPAP
TPIVKKDPSFFARLFAWFAQLFSSNEEQETKQVEQKRNQPNRNQRGGNRNPRGGNRNQRG
GENRNQRGRNRRDNTNAEKDDNKEAANKDAAKDSANENQNQNRDQKQGRGRNQKKDQQGN
RSRQPAENKQKPADGNSSNEEGQESGNARRGRRRSSNDNRRRRQSKAQAGERDQQSNQTE
SGNAQTDAVAPKPAQGSDKPAQAPKAEAAKPEATKSDATDSKPAAPAKAETPKAPPANGA
SAEAKPTAEAQANKAQQPKPAAPKADAPAAAKPAAEAPKPQEAPKPQPSKPQGNAQAETK
PQQSAPQPKAEAPKPAAAPAAPAKVEAKVEAPKPAAPATPAAATPAAAKPSAPAAPAAAK
PAPKPQEAEQPGQRASNDPREIRRRQQQEAAKAKAAAATEVKKDS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgcaacacactcagaagagctacgtgttgctctggtcgat
ggccaacgtttgtatgatctggacattgaacaccgcacccgagaacagaaaaagtcaaac
atctacaagggccgaatcacccgcatagaacccagtctagaggccgcgtttgttgatttc
ggctctgaacgccacggttttctgccactgaaagaaatctcccgcgagtatttcgtaaaa
aaccccaaagacatccaaggtcgcttcaccatcaaggatgtgatcaaggaaggtcaggaa
gtcatcctgcaagtaggtaaagaagagcgcggcaacaagggcgcagccctgtccaccttc
atcagcctggccggacgctatctggtactgatgcctaacaacccccgtgccggcggcatt
tcacgtcgcatcgatggcgatgagcgagccgctctgcgggacgttatgaacggcctgaat
atccctcaggatatgggcgttatcatccgcactgccggtatcggccgcagcgtggcagaa
ctgcagtgggatctggactacctgctgaccctgtggacctccatcagtgaggcctccgaa
aagcgctctgccccattcctgatctatcaggaaagcaacgttattatccgtgcggtgcgt
gattatctgcgccaggacatcggcgaagtgctgatcgacaccaaggaagtgtacgaagaa
gctctgactttcgtgcgtcaggtaatgccgcagtacgaaaacaagatcaagctgtatacc
gataatatccccctgttcaatcgttatcagatcgaatcccaaatcgaaaccgctttcgaa
cgcgaagtgaaattgccttccggcggctctatcgtgatcgatcctaccgaagcactggtg
tccatcgacatcaactcctccaaggccaccaaaggcgcagatatcgaagaaactgctctg
atgaccaacctggaagctgctgacgagatcgcccgccaactgcgcctgcgtgatatcggt
ggactgatcgtagtggatttcatcgatatgaacgccaaccgcaaccagcgcgaagtggaa
aaccgcatgcgtgatgcgctggaagtggatcgtgcccgtattcaggtgggccgcatttcc
cgctttggcctgatggaactatcccgtcaacgcctgcgaccctcgttaggtgaaaccagt
ggccatatctgcccccgctgcagtggcgtaggcttcattcgcgacctgcactcattatct
ctgaacattatgcgcttgattgaagaagaagcgctgaaagagaacagtggtgaaatccac
gctaaagtacctgttaatgtggcgacctacctgctgaatgaaaagcgcgacaatattgtg
gccatcgaaagccgcaacaaagtacgtgtattgattctgcccagcccgaatctggaaact
ccacattatgaagtcaaccgtatccgcagtgatcaggtagagggtgaaggcattgccagc
tatgacctgattgatgccgctgatgagcttgaagaggatctgttggctccgggtgaaagc
cccattcaccgccaggaagaagcagcggtgcaaatgattcagcccaacacccctgcgcca
acacccatagtgaaaaaagatccaagctttttcgctcgcctgttcgcatggttcgcccag
ctgttcagcagcaatgaagagcaggaaaccaaacaggtagaacagaaacgtaaccagcca
aatcgcaaccagcgtggcggaaaccgtaatccgcgtggtggcaaccgcaaccagcgtggc
ggtgaaaatcgcaaccagcgtggccgtaaccgccgcgacaataccaacgcggaaaaggac
gataataaagaagctgcaaataaggatgccgctaaggattcggccaacgaaaaccaaaac
cagaaccgcgatcagaagcagggacggggccgcaaccagaagaaagatcagcaaggcaac
cgtagcagacagccagccgagaacaagcaaaagcctgctgacggcaacagtagcaatgag
gaaggccaggagtcggggaacgcccgtcgcggccgtcgtcgcagctccaatgacaatcgc
cgtcgccgtcagagcaaagcgcaagccggtgagcgcgatcagcagtctaatcaaaccgag
tctggtaatgctcaaactgacgctgtagccccgaagcctgcccaaggctcagacaaacct
gcgcaagcgccgaaagctgaagcagcaaaacctgaggctaccaagtcggacgcaactgac
tccaagccagcggctcctgctaaagccgaaacgccaaaagctccaccggccaatggcgca
tcagctgaagccaaaccaacggcagaagcccaggcaaacaaagctcagcagccgaaaccg
gcagcacccaaagccgacgctccggctgctgcgaaacctgctgcagaagcgcctaaacca
caagaggctccaaaacctcagcccagtaaaccgcagggtaatgcgcaagcagaaaccaag
ccccagcagtcagcgccacagccaaaagccgaagcgcctaaacctgctgccgcgccagct
gcgcctgccaaggttgaagccaaagtagaagccccaaaaccggcggcacctgctactccg
gcagcagctactccggcagcagcaaagccaagtgctccagcggctccggcagcagccaaa
cctgctcccaagccacaggaagcagaacagcccgggcagcgtgcttctaacgatccgcgg
gaaatacgccgtcgccagcagcaagaggccgccaaagccaaagccgccgccgcgacagaa
gtaaagaaagacagctaa
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