Kangiella aquimarina: SR900_08705
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Entry
SR900_08705 CDS
T09621
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kam
Kangiella aquimarina
Pathway
kam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR900_08705 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kam03019
]
SR900_08705 (rne)
03009 Ribosome biogenesis [BR:
kam03009
]
SR900_08705 (rne)
Enzymes [BR:
kam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SR900_08705 (rne)
Messenger RNA biogenesis [BR:
kam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SR900_08705 (rne)
Ribosome biogenesis [BR:
kam03009
]
Prokaryotic type
rRNA processing factors
SR900_08705 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WQG84545
UniProt:
A0ABZ0X1S6
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All DBs
Position
1859177..1861990
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AA seq
937 aa
AA seq
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MRRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD
YGAERHGFLPLKEVAREYMHNAPSRGRPTIKDALKEGQEIIVQIDKEERGNKGAALTTSI
SLAGSYLVLMPNNPRAGGISRRIEGEERAELKQVMSQLPVPNGMGCIVRTAGIGKSLEEI
QYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRQEVYERV
KTELQYQRPDFVNKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEALLS
IDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREVER
VLKESVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSLAL
SILRLMEDEAMKESTAEVQALVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETP
HYEVLRVKAGETLEDASYSLIGDAPQVELVRSSTQAAPASDQPALKGVKPTTPPPAPSKP
VKKKKPGLFKRLWTALFGDSDDKKKKTKKSQNNRGKYDRNNRGRNNRYQGKKRNNQKGRN
QNRNQQQEQRDDKEKPQQKSGGRPQKKQQDKPQRKQQAAHKQEPKHEQKKEQQPEAKRPP
RKTRAERMAEAQQGNKPAQEQQSSPNKEQAQQQKKPSVRSAIKGKQPQAEVAESKPATKQ
GKTGNEKPAKERTPKSKAQAEDIIVYKAHKSLERSITDVMGYTKDKKASNVEPDAPAQQA
ANDSNIEQSTSSKPKAASEQVKAEPVAKTLDAETVEPFVNKDVEAANEKPQPSSDIQQEA
NLAKPSPENDDNAKSNASKAESDSSQSTENLVAKKHESTHASAPMAKAVTTDTVVSAAFT
PKPYQFSDSDIITSDIEDSSDKHSNSPAAKTSSLSDA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtatgttgattaacgcaacgaatcatcatgaagagttgcgtgttgcgctggtg
gatggccagcgtttgtatgatttagatatcgaactggcaggaagagaacaaaaaaaaggt
aacatctacaaaggcaaggtcactcgtatcgagccgagccttgaagccgcttttgtggac
tatggcgcagaacgccatggcttccttcctctaaaagaagtcgcccgcgaatatatgcat
aatgccccatcgcgtggtcgccctaccattaaagatgcccttaaagaaggccaggaaatc
attgttcagattgataaagaagagcgtggtaacaaaggcgcagccttaactacatcaatc
agtctggccggcagttacctggttctgatgccaaacaatcctcgcgctggcggtatatca
cgccgtatcgaaggtgaagagcgtgccgaacttaagcaggttatgagtcaacttcctgta
cctaatggtatgggctgcatcgttcgtaccgcaggtattggcaaaagcctcgaagaaatc
caatacgatttcaactacttgatcgatacctggaatggcattaaacaagttgctggcacc
cgccctgctcctttcttaattactcaggaatctgacgtaatcactcgagcaatccgtgat
tatctgcgtcctgatatcggtgaaattatcattgatcgccaggaagtttatgagcgtgta
aaaactgaacttcagtaccagcgtcctgactttgtgaacaaggttaagctgtatcgcgat
gaaatccctttattcaaccgttaccaggttgaaagccagattgaaagcgccttccaacgc
gaagtaagacttccatccggtggctcagtcgtttttgaccaaacagaagctctgttatca
atcgatattaactctgcccgcgcaaccaagggtggagatattgaagaaacggctctacac
actaacgtagaagctgctgaagaaattgcccgccaattacgcttgcgtgatattggaggc
ttaattgttatcgacttcatcgacatggggcctccccgtaaccaacgtgaagttgagcga
gtattaaaagaatcagttgctcgtgatcgcgcaagaattcagattggtcgcatttctcgt
tttggtttgctagaaatgtcacgccaacgcttgcgtccatcattggaagaatcaagccaa
cacgtctgtccacgttgtactggttcaggcgttattcgtggtaccgactcactggccctt
tctattctgcgtctaatggaagacgaagcaatgaaagagtctaccgcagaggttcaggct
ttagttccagtagaagttgccacattcctgttgaatgaaaagcgtcgaaaaatcgagcaa
atcgaaaagcgtcaaaaagttcgcctggtggtagtaccaaatccttacctggaaacacct
cattatgaagtgttacgcgtcaaagctggcgaaaccttagaggatgccagctacagtcta
attggtgatgcgccacaggttgaattggtaagaagcagcactcaagcagcacctgcaagt
gatcagccagcactaaaaggcgttaaaccaacgactccaccgccagcaccaagtaaacca
gtcaagaagaaaaagcccggtctatttaaacgactttggactgctttatttggcgacagt
gatgacaagaaaaagaaaaccaaaaaatcacaaaataaccgtggtaaatacgaccgtaat
aatcgtggccgtaataaccgctaccagggtaaaaagcgcaacaaccagaaaggccgtaat
caaaaccgcaatcagcagcaggaacagcgggatgataaagagaagccgcaacaaaagtct
ggtggtcgcccacaaaagaaacaacaagacaagccgcaaagaaaacagcaggctgctcat
aaacaagaaccaaagcatgaacagaaaaaagagcagcaacctgaagctaagcgtcctccg
cgtaaaacacgtgctgagcgtatggctgaagctcaacaaggtaataagccagctcaggag
caacaatcaagtcctaacaaagagcaagctcaacaacagaaaaaaccttcagttcgctca
gcgataaaaggtaaacagcctcaagctgaagttgctgagagtaagccggctacaaagcaa
ggtaaaactggtaatgaaaaacctgcaaaggaacgcactcctaagagtaaagctcaagca
gaagacattattgtgtataaagcccataaatctttagagcgcagtattactgacgttatg
ggttacactaaagacaaaaaggcgagtaatgtagaaccagatgcacctgcgcaacaagca
gctaatgattctaatattgagcagtctacttcatctaagcctaaggcagcatcagagcaa
gtcaaagctgagcctgttgctaaaacattagatgcagaaactgttgagccatttgtgaat
aaagatgttgaagcggcaaatgagaaacctcaaccaagctctgacatccagcaagaagct
aacttggcaaaaccatctcctgaaaatgatgataatgccaaaagtaatgcatctaaagca
gagtcggactctagccaatcaactgagaatttggttgcaaagaaacatgaatcaactcat
gcttcagcgccaatggcaaaagctgtaactacagatacagtcgtatcagcagcattcacg
ccaaagccttatcaattctcagatagtgacattatcacttctgatattgaagacagcagt
gataagcacagcaacagcccagcagctaaaaccagctctttaagtgatgcgtaa
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