Kangiella aquimarina: SR900_08745
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Entry
SR900_08745 CDS
T09621
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kam
Kangiella aquimarina
Brite
KEGG Orthology (KO) [BR:
kam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kam03019
]
SR900_08745 (hrpA)
Enzymes [BR:
kam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SR900_08745 (hrpA)
Messenger RNA biogenesis [BR:
kam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SR900_08745 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
RsgA_GTPase
ABC_tran
ResIII
NACHT
AAA_23
AAA_30
T2SSE
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WQG84553
LinkDB
All DBs
Position
complement(1874471..1878430)
Genome browser
AA seq
1319 aa
AA seq
DB search
MSKTPNDSSKEASTKPGIENNKNSHNNSPPIQKLIAEQLADCQLVDQFELSKLKSVITKR
QKNNQPVSKLINKAQQLLTDSMRIVEQRKQIIPKDIEYDLALPVCQARDDVRKAVEENQV
VVIAGETGSGKTTQLPKICLQLGLGVYGKIGHTQPRRVAATSVARRIAEELKTDLGEVVG
YSIRFNDQSNPVTPVRVMTDGILLNEITHDPLLRQYDTLIIDEAHERSLNIDFLLGYIKN
ILPKRPDLKVIITSATIDVERFARHFELDGKPAPILEISGRTYPVDVWYRPDDEENPSPQ
VERIGHAVDELINYAPGDILIFLSGEAEIRETAKFLRKERFQGCEVLPLYARLSMREQEK
IFHPSGGKRRIILSTNVAETSVTVPGIRFVIDPGFARISRYSVRNKIQRLPIEKISQASA
NQRKGRCGRVAEGVCIRLYEEEDFLNRPEFTDAEILRTNLAAVILQMKQLGLGDIEAFPF
IDEPAPKQISDGLNLLSELQAVDAKKQLTAIGRKMARLPIEPRLARILLAAQDESCIREA
LILAAFLSVKDPREWPFEKRELAQQKHAKYRHPQSDFIAIINLWDHLHQQQEDLSNNAFR
RYCQEELINFNAYREWRSTYRQLKTLVKSEHHQTQKQAEPINPDDKVYYAKLHSILLTGL
LSFIGQKDIEKGYLGTRQTRFMIHPQSANFKKQPPWVMAFEIVETTQNYARLTAMIETPW
IERIGGHLIKSHYFDAHWEKKRGAVVASLQQTLLGLKIVSNRTVDYSAVEPELCRELFIL
HGLVRRELDVRHDFQQKNEQLWHEVEQEVAKARQADMRADERDLIAWFDKRLPESICNVK
QLNQWLKKNKQQNNQLLSLNKDVLFKAEEQDANLYPETLTVNYIELPLSYHFEPGHPTDG
VTVKIPLSLSQQFKDSDFERLVPGLLEEKIEFMLRSLPKRFRKNFVPIPQFAQACYEQVL
EQQGSLIDIISRHLFKMTGVILPKEAWQELSLPEHYLMRFEIVDDKGKTLKSGRSLEQSQ
DIKKAKISVSKKKNSKPQTYTSWPDDFVKDGMVEEAGTKIPVTYALEDCGDKVRSIAVVN
KKQAQNVHVRGVCRLLALEKASLLGYMKKKYHNKQKLTLSVSTLGSVDELIDDAAMACLR
ALVESDVPYKKSEYQTLSQKAEKELVPAATAMLDDLVQVLQLRATVLAEAKGMGKSLAST
RKDIIGQCDYLFQPGFCFRFGAEKIKDFKRYLSAVEKRIERAKLNPLKEAESLIAISDWV
DVRESLAQDKAIPAFEVDEFNWMLEEFRISLFAQGQKTRFPISAKRLQKQLDELEKIYY
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaactcctaacgattccagcaaagaagcttcaactaaacctggcatcgaaaat
aataagaattctcacaacaacagtccccccattcagaaactgattgctgaacagcttgca
gactgccagctagtggatcagtttgagctgtcaaagctgaagtcagttatcaccaaacgg
caaaaaaataaccagccagttagcaagctgatcaataaagctcaacagctattaaccgat
tcgatgcgaattgttgagcagcgtaaacaaatcattcctaaagacattgagtacgatctg
gcgctgccggtttgtcaggccagggacgatgttcgaaaggccgttgaagaaaatcaggtt
gtggttattgcgggcgaaacaggttccggtaaaactactcaactacccaaaatatgcctg
caactgggcttaggggtttatggcaaaattggccacactcaaccacgacgagttgcagcg
accagcgttgcgcgtcgcatagcagaagaattaaaaaccgatctgggcgaggttgttggt
tacagcattcgatttaatgatcagtcgaatccagttacccctgttcgtgtcatgactgac
gggattttattgaatgagataactcatgatccattgctgagacagtatgacactttgatc
attgatgaagcccatgagcgcagtcttaatatcgattttttgcttgggtatatcaaaaat
attttacccaagcgtcctgatttaaaagtaatcatcacctcggcaaccattgatgttgag
cgctttgccagacatttcgaacttgatggcaaacctgctccaatactggagattagcggt
cgtacttatccggttgacgtctggtaccgacctgatgatgaggaaaatcccagcccgcaa
gttgagcgtataggacatgcagttgatgaactcatcaattatgccccaggtgatatattg
atattcctgtcaggcgaagctgagattcgtgaaacggcaaagttcctgcgcaaagaacgt
tttcaaggctgcgaagtgttgccgctctatgcgcggttgtctatgcgcgagcaggaaaag
attttccatccgtctggtggcaaacggcgaattattctttcgactaacgtggctgaaact
tcggttactgtgcctggaatacggtttgttatcgatcctggctttgctcgaatcagtcgt
tactcggtgcgcaataagattcagcgcttgccaattgagaaaatctcgcaggccagcgct
aatcaacgcaaaggtcgatgtggtcgtgtcgcagagggtgtttgtattcgcctgtatgag
gaagaagactttttaaaccgccctgaatttaccgatgcagaaatcctgcgtaccaatctg
gctgcagttattttgcagatgaagcagttggggcttggtgatatagaggccttccccttt
attgacgagccagcaccaaagcaaattagtgacggcttaaatttattatctgaattgcag
gctgtagatgccaagaaacaactgactgccattggtcgtaaaatggctcgcttgcctatt
gagccaagactggcccgtatacttctggctgcccaggatgagtcctgcatccgtgaagct
ttaattcttgctgcttttctgtcggttaaagatcctcgagagtggccttttgaaaagagg
gaactggctcagcagaagcatgctaagtacaggcatcctcaatctgattttatcgcgatt
attaatttatgggatcatctgcatcagcagcaggaagacttgtcgaacaatgcattccgc
cgttattgccaggaagagttaattaatttcaatgcctatagagaatggcgaagtacttat
cgtcagcttaagactttagttaagtcagaacatcatcaaactcaaaagcaggcagagccc
atcaatcctgatgacaaagtctattatgccaagctgcattcgattttattgaccggctta
ttgagttttattggacaaaaggatattgagaagggttatcttggcacgcgacagacacga
tttatgattcacccacaatcggcaaactttaagaagcagccgccatgggttatggcattt
gaaattgttgagactacccagaactatgcacgattgacggctatgattgaaacgccctgg
attgaaagaatcggtggccacctgatcaaaagccattattttgatgcgcattgggagaaa
aagcgtggtgctgtggttgcatcattgcagcagacattgttggggctgaagattgtttca
aatcgaaccgtcgattattcggcagtagagcctgaactgtgtcgtgagctttttattctg
catgggcttgttagaagagagcttgatgttcgacatgactttcaacagaagaatgagcag
ctgtggcatgaagtggaacaggaagtcgctaaggccagacaggcagatatgcgcgctgat
gagcgtgatttaattgcatggtttgacaagcgattgcctgagagtatctgtaatgtaaaa
caactcaatcagtggctaaagaaaaataaacaacagaacaatcaactgctctccttgaat
aaagatgttttattcaaggcagaagagcaggatgctaatttataccctgaaacgctaacg
gttaattacattgagttgcctttaagttatcactttgagcctggacatcctacagatggt
gttacggttaaaataccactatctcttagccagcaattcaaagactctgattttgaacgg
ttagtaccaggacttttggaagaaaaaattgagttcatgctgcgctctttgccaaaacgc
ttccgtaaaaactttgtaccaattcctcagtttgcacaggcctgttatgaacaggtccta
gagcagcagggcagtttaattgatattatcagtcgacacttattcaaaatgacaggggta
attctccccaaagaagcctggcaggagctgagcttgcctgagcattatttaatgcgcttc
gaaattgtcgatgataaaggcaaaactcttaaaagcggtcgcagtcttgagcaatcgcag
gatattaagaaagccaagattagtgttagtaaaaagaagaacagtaaaccacaaacctat
accagctggccggatgattttgttaaagatggcatggtggaagaggctggcaccaaaatt
ccagttacttatgcgctcgaagactgtggtgataaggttcgatctattgcggtcgttaat
aaaaagcaggcgcaaaatgtacatgttcgtggtgtctgccgattactggcgctggaaaaa
gcctcactgcttggctacatgaaaaagaaatatcacaacaagcagaagttaactctgtca
gttagtactttaggaagcgtggacgagcttattgatgacgcagccatggcctgtttacga
gccttagtcgagagtgatgttccatataaaaagagtgagtaccaaacgctttctcagaaa
gcagaaaaggaactggtaccggctgctactgcaatgctggatgatctggttcaggtgctt
caattgagagcgacggtattagcagaagcaaaaggtatgggtaaatctctagccagtact
cgaaaagatatcattggtcagtgtgattacttattccagccgggcttttgtttcaggttt
ggtgcggaaaaaataaaagattttaaacgttatctctccgcggttgaaaagagaatagaa
agagctaagttaaatccgctaaaagaagctgagtctttgattgccatctcggattgggtg
gatgtgcgcgaaagcctagcacaggataaagccattcctgcttttgaagtggatgaattt
aactggatgttggaggagtttagaatttcactttttgctcaaggccaaaagactcgtttt
ccgatctctgccaagcgcttacagaagcagctcgatgagctggagaaaatctattattag
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