Kordia antarctica: IMCC3317_00860
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Entry
IMCC3317_00860 CDS
T06371
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kan
Kordia antarctica
Pathway
kan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3317_00860 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kan03019
]
IMCC3317_00860 (cshA)
03009 Ribosome biogenesis [BR:
kan03009
]
IMCC3317_00860 (cshA)
Enzymes [BR:
kan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC3317_00860 (cshA)
Messenger RNA biogenesis [BR:
kan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC3317_00860 (cshA)
Ribosome biogenesis [BR:
kan03009
]
Prokaryotic type
rRNA helicases
IMCC3317_00860 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHI34742
UniProt:
A0A7L4ZCX3
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All DBs
Position
complement(86694..88514)
Genome browser
AA seq
606 aa
AA seq
DB search
MTKFEELGLQDSLLRAIQDMGFETPSEVQEKTIPLLLNEDVDVVALAQTGTGKTAAFGFP
LIQKIDANSKTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKR
GAQIVVATPGRMQDMINRRLVDISKIEYCILDEADEMLNMGFYEDITAILSHTPDEKNTW
LFSATMPREVSAIAKKFMHSPKEITVGSRNSGTDTVSHEFYAVSGRDRYLALKRLADANP
DIFSVVFCRTKRDTQAVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRSRQIQMLVATDV
AARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKSGVSIVIVTKSEMRKIKSIERKI
QQKFEQKTIPSGMEICQIQLFHLANKIHNTEVNDEVEKFLPSISEIFEDTSKEELIKRMV
SVEFNRFYNYYKKSKDPNQITSSDTGSDNHYSSNGGGNANSTRYFINVGEKDGYDWMRLK
DFLKETLDLGRDDVYKVDVKESFSFFNTDVDKKERVLEHFTDFKVDGRFVNVEESTTGGG
GGGGNRRRSSGGGGGGNRRRSGGGDSGGGDRRRRDRSSSSSSSDGGRRRSSGGDSGGGFR
GRSRRK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagaattaggtcttcaagactcgcttttgcgtgcaattcaggatatg
ggctttgaaacgcctagtgaagtacaagaaaaaacaattccattattacttaacgaagac
gttgatgttgttgcattagcacaaacaggaactggtaaaacagcagctttcggttttccg
ctaattcagaaaattgatgcgaacagcaaaactacacaaggattaatcctttctccaacg
cgtgaattgtgtttacaaatcaccaacgaattaaaaaactattctaaatacgaaaacatc
aatgttgttgctatttatggtggtgcaagtattaccgatcaagcaagacaagtaaaaaga
ggtgcacaaattgtggtagcaactccaggtcgtatgcaagatatgattaaccgtcgcttg
gttgatatttctaaaatagaatactgtattcttgatgaagcagatgaaatgttgaacatg
ggattctatgaagacattacagctattttatcgcatacgccagatgaaaaaaacacatgg
ttattctcggctacaatgccaagagaagtgtctgcaattgcaaagaaatttatgcattcg
ccaaaagaaatcacggttggatcgcgtaactctggtacagataccgtaagtcacgaattt
tacgcagtaagcggaagagatcgttatttagcattaaaacgtttagcagatgccaatcca
gatatattttcagtagttttctgtagaacgaaacgtgatacacaagctgtcgctgaaaaa
ttaattgaagatggttacaacgctgcggcgattcatggtgacttaagccagaatcaacgt
gatttagtgatgaaatcattccgatctcgtcaaatacaaatgttagttgctacagatgtt
gcagcgcgtggtattgatgtagacgatattacacacgtaattaactatcaacttcctgac
gaagtagaaacctatacacaccgaagtggtcgtactggtagagctggaaaatcaggggtt
tctattgtaattgtaacgaaaagtgaaatgcgtaaaatcaaatcgatcgagcgtaaaatt
caacaaaaatttgaacaaaaaacaattccatcaggaatggaaatttgtcaaattcaattg
tttcacttagcaaacaaaattcacaatacggaagtaaatgacgaagtagaaaagttttta
ccttctattagtgaaatttttgaagatacttctaaagaagaattaattaaaagaatggtt
tctgttgaatttaacagattctataattactacaaaaaatcaaaagatccgaatcaaatc
acaagttctgatactggatcagacaatcactattcatcaaatggtggtggaaatgcaaat
agtacacgttatttcatcaatgttggtgaaaaagacggatacgattggatgcgtctaaaa
gatttcttaaaagaaacattagatttaggacgcgacgatgtgtacaaagtggatgtaaaa
gaaagtttctctttcttcaatacagatgttgacaaaaaagagcgtgttttagaacacttt
acagactttaaagttgacggacgttttgtaaatgttgaagaatctactactggcggtggc
ggcggtggtggaaaccgaagacgctctagtggcggtggtggcggcggaaaccgaagacgt
tctggcggcggagatagcggcggtggcgatcgtagaagaagagatcgttcatcatcatct
tcatcatctgatggtggaagaagaagaagcagcggcggagatagcggcggcggattcaga
ggaagatcaagaagaaaataa
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