Kordia antarctica: IMCC3317_04010
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Entry
IMCC3317_04010 CDS
T06371
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kan
Kordia antarctica
Pathway
kan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3317_04010 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kan03019
]
IMCC3317_04010 (rhlE_1)
Enzymes [BR:
kan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC3317_04010 (rhlE_1)
Messenger RNA biogenesis [BR:
kan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC3317_04010 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
AAA_22
UvrD-helicase
P-loop_SecA
Exotox-A_cataly
ERCC3_RAD25_C
ssDNA-exonuc_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QHI35055
UniProt:
A0A7L4ZEK7
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All DBs
Position
complement(439373..440674)
Genome browser
AA seq
433 aa
AA seq
DB search
MSFKSLGLSDALLRAISKKGYTTPSIIQEKAIPLVLQGKDVLASAQTGTGKTAGFTLPML
QLLSQEPPLRRRPIRALILTPTRELAAQIYANVQEYGTFLDIRSTVIFGGVNARPQIATL
RNGVDILVATPGRLLDLQNQGALSLSKVEILVLDEADRMLDMGFLRDIKRVIALVPKRRQ
NLLFSATFSKDIRKLAQSILHNPVSVEATPENTTAEKVIQKVYRVDKPQKSELLIKLISE
GNWSQVLVFTRTKHGANRLSKKLVSSNISSAAIHGNKTQNARTKALDGFKKGNIRILVAT
DIAARGLDIPLLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRGIEK
LLGEKLVSEEIEGFEADPNYTPPEPEKRGQRPSRKPKQESKGTSGGSQRNRKSNSNSDSS
SAKKKKPNSRRRY
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaaatcattaggattatctgatgcattattacgtgcaatcagcaaaaaaggg
tatactacgccttctattattcaagaaaaagcaattccattagtattacaaggtaaagat
gtgttggcttccgcccaaactgggactggaaaaacagcaggttttacgttgccaatgttg
caattattatcacaagaaccgccattacgcagaagaccaattagagcgttaatcttaaca
ccaacgcgagaactggcagcacaaatttatgcgaacgtacaagaatatggtactttttta
gatattcgttctaccgtgatttttggaggtgtaaatgccagaccacaaattgcaacctta
cgaaatggtgttgatattttagtcgctacgccaggaagattgctcgatttgcaaaatcaa
ggagcattgtcattatcgaaagttgaaattttagttttagatgaagccgatagaatgttg
gatatgggatttttgcgcgatattaaacgtgtgatcgcactcgttccgaagagacgtcag
aatttattgttttcggctactttttcgaaagatattagaaagttagcacaaagtatttta
cataatcctgtttctgtggaagcaactcccgagaatacaactgctgagaaagtgattcag
aaagtgtatagagttgataaaccgcaaaaatctgagttgctgattaagttgatttcagaa
ggcaattggagtcaagttttagtgtttacacgaacaaaacatggcgcaaatagattgagt
aagaaattagtttctagcaatattagttcggcagcgattcatggaaataaaacacagaat
gcgcgaacaaaagcattggatggttttaagaaaggaaacattcgtattttagttgcaaca
gatattgccgcgcgtggtttggatattccattattgccacatgtggtaaattacgaattg
ccaaatgttcctgaggattatgtccacagaattggtcgtacaggtcgtgctggcgcaagt
ggagaagcgatttctttagtttctgcggaagaatatgaatatgttagaggaattgaaaag
ttattaggagaaaaactcgtttcagaagagattgaaggttttgaggcagatccaaattat
acgccaccagaaccagaaaaacgaggacaacgcccttctagaaaaccgaaacaggaatca
aaagggacttctggcggaagccaacgaaataggaaatctaattctaatagtgatagttct
tctgctaaaaagaagaaaccgaattctaggagaaggtattaa
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