Kordia antarctica: IMCC3317_12070
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Entry
IMCC3317_12070 CDS
T06371
Symbol
recQ_4
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kan
Kordia antarctica
Pathway
kan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3317_12070 (recQ_4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kan03019
]
IMCC3317_12070 (recQ_4)
03400 DNA repair and recombination proteins [BR:
kan03400
]
IMCC3317_12070 (recQ_4)
Enzymes [BR:
kan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC3317_12070 (recQ_4)
Messenger RNA biogenesis [BR:
kan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC3317_12070 (recQ_4)
DNA repair and recombination proteins [BR:
kan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IMCC3317_12070 (recQ_4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
GerE
Toprim_3
Sigma70_r4_2
zf-CXXC
HTH_7
Terminase_5
HTH_38
DUF6293_C
Motif
Other DBs
NCBI-ProteinID:
QHI35859
UniProt:
A0A7L4ZHE7
LinkDB
All DBs
Position
1445307..1447409
Genome browser
AA seq
700 aa
AA seq
DB search
MIAPTKIKSTLKEYFGYDAFRPLQETIINSIFDGKDNLVIMPTGGGKSICFQLPAILLDG
ITIVISPLIALMKDQVDGLTTNGISAAYINSSQSEPEQQEIYAKIAAGEIKLLYTAPESL
SYLEHVFNSQTISLIAIDEAHCISSWGHDFRPAYTNLGYLKNRFPNIPIIALTATADKAT
REDIANQLNIPNATQHIASFDRKNLELEVRPANDRVKQIISFIDEQPNESGIIYCLSRKA
TEAVADKLKAASINAKAYHAGISHDKRSQIQEDFINDKCQVICATIAFGMGIDKSNVRWV
IHYNLPKNIEGYYQEIGRAGRDGLPSNTILFHSYSDVIQLQKFAQNSGNVEVQLAKLDRM
KEYADALSCRRKILLSYFGELISEDCGNCDVCKNPPQFFDGTIIAQKALSTVARLDGQEP
IGVVIDVLRGAQNSAILEKGYENVKTFGIANDISWLDWKQYVTQLVNLGYVEIAFHQNNK
LKLTEFAKDVLFNGKKVALANLVEAAATIEEEKAKTTKVKKNSLFERLRQLRLDIAREEN
VPAYQIFNDATLKEMEIKRPITDEEFMEINGVGRRKMENYGYQFIKEIIKFAEEKKQKRK
VDTTKKTYELYQQGLSIAEIAKERKLAETTIFSHISKLYGDGKDIDMLQFIDKHDLENIR
KAKVELEDPDTLKAYFQHFEEAVPYATIRVGLSILNREDA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgatagccccgacaaaaattaaaagtaccctaaaagagtatttcggatatgatgcattc
cgaccacttcaagaaactataatcaattctatttttgatggaaaggataacttggtgatt
atgcctactggtggcggaaaatcaatttgcttccaattacctgcaattttattggacgga
attacgattgtaatttctccgttaattgcattaatgaaagatcaggttgatggattaacg
accaacggaatttcggcagcatacattaacagtagtcaaagtgaacctgaacaacaagaa
atttatgctaagattgctgctggtgagattaaattattatacactgcgccagaaagttta
tcgtatttagagcatgtttttaatagtcaaactataagcttaatagctattgatgaagcg
cattgtatttcttcttggggacacgattttcgtcctgcgtatacaaatcttggttattta
aaaaatcgttttccgaatattcctataattgccttgacagcaactgccgataaagctacg
cgtgaagatattgccaatcagttgaatattccgaatgcaacacaacatattgcttctttt
gatcggaaaaatttagagttggaagttagacctgcaaatgatcgtgtaaaacaaattata
agttttatagacgagcaaccaaacgaaagtggtattatttattgcttaagcagaaaagcc
acagaagccgttgcggataaattaaaagccgctagtatcaacgcgaaagcgtatcatgcg
ggaatttcacatgataaacgttcacaaattcaagaagattttatcaatgataaatgtcaa
gttatttgtgcaacaattgcttttggtatgggaatcgacaaatcgaatgtacgttgggtt
attcattataatttgcctaaaaacattgaaggttattaccaagaaattggtcgtgcaggt
cgcgatggtttgccttccaatacgatcctttttcacagttatagcgatgtaattcagtta
cagaagtttgcacagaattctggaaatgtagaagtgcaactcgccaagttggaccgaatg
aaagaatacgcagatgcattgagttgtcgtagaaagattttgttgagctattttggcgaa
ttgattagtgaagattgtggaaattgcgatgtttgtaaaaatccaccacagttttttgac
ggaactattattgcgcaaaaagcattatcaacagtagcaagattggatggacaagaaccg
attggcgttgtgattgatgttttgcgtggcgcacaaaatagcgcgattttagagaaagga
tatgaaaacgttaaaacattcggaattgccaacgatatttcttggctcgattggaaacaa
tatgtaacacaactcgtgaatcttggatatgtagaaattgcttttcatcaaaataataag
ttgaaattgaccgagtttgcgaaagatgttttgtttaatggaaaaaaagtagcacttgct
aatttagtagaagctgcggcaactattgaagaagaaaaggcaaaaacaacaaaagttaag
aagaattcgttatttgaacgtttgcgtcaattacgtttggacattgccagagaagaaaat
gtgccagcgtatcaaatttttaatgatgctacgcttaaagaaatggaaatcaaacgtcca
attacggacgaagagtttatggaaattaatggtgtcggacgtagaaagatggagaattac
ggatatcaattcatcaaggaaatcatcaaatttgcagaagaaaagaaacaaaaacgtaaa
gttgatacgacaaagaaaacatacgaattgtatcaacaaggtttgtcgattgccgaaatt
gcaaaagaacgtaaacttgcagaaacgactattttttcacatatttccaagttatatgga
gacggaaaagatattgatatgcttcaatttattgataaacacgatttggaaaacatccga
aaagcaaaagtcgaacttgaagatccagatactttgaaagcgtattttcaacattttgaa
gaagccgttccgtatgcgactattcgtgttggattgtctattttgaatagagaggatgct
tga
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