Kordia antarctica: IMCC3317_14760
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Entry
IMCC3317_14760 CDS
T06371
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kan
Kordia antarctica
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kan03009
]
IMCC3317_14760 (rlmCD)
Enzymes [BR:
kan01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IMCC3317_14760 (rlmCD)
Ribosome biogenesis [BR:
kan03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IMCC3317_14760 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
PrmA
TRAM
Methyltransf_11
N6_N4_Mtase
UPF0020
PCMT
RrnaAD
FtsJ
DUF5590
Methyltransf_2
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
QHI36122
UniProt:
A0A7L4ZHM3
LinkDB
All DBs
Position
1808234..1809646
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AA seq
470 aa
AA seq
DB search
MGRRNRRQVFEKVEVIDTAVKGKTVAKTDEGVIIFLPNAVPGDVVDIQTYKKRKAYYEGK
ATHFHTLSDKRVEPVCQHFGTCGGCKWQHMGYEHQLFYKQKEVFNNLTRIGKVELPELTP
ILGSAEQYFYRNKMEFSFSDSRWLTQEEVDSEEDLGDRNALGFHIPGMWDKILDVKKCHL
QADPSNAIRNSIRQFAIENDITFFNTRHQTGLLRTLMLRTSSNGEVMVLIQFYQEDVEKR
ELLLNYVKETFPEITSLLYVINGKGNDTIYDQEVICFSGRDHIFEEMEGLKFKINAKSFY
QTNSDQAYELYKITRDFADLKGDELVYDLYTGTGTIAQFVAKKAKKVVGVESVPEAIEAA
KENAELNNITNTEFYVGDMKKVFNAKFISTHGTPDIIITDPPRDGMHGDVVQQIINIAPK
KIVYVSCNSATQARDLALMDALYKVTKVQAVDMFPQTHHVENVVLLERRN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaagaaatcgaagacaagtttttgaaaaggtggaagtgattgatactgccgta
aaaggaaaaacagtagcaaaaacagatgaaggagtcattatatttttaccaaacgccgtt
cctggcgatgtggtagatattcaaacctataagaagcgtaaagcctattatgaagggaaa
gcaacgcattttcatacgctttctgataaacgtgtggaacctgtttgtcagcattttgga
acttgtggaggttgcaaatggcaacatatgggctacgaacaccaattgttttacaaacaa
aaagaggtttttaataatttaacccgaattggaaaggttgaattaccagaactcacacca
attttaggaagtgccgaacaatacttctaccgaaataaaatggaattttcgttttcggac
agtcgttggttaacgcaagaagaagtagattcagaagaagatttaggcgatagaaacgca
cttggatttcatattcctggtatgtgggacaaaattttagatgtaaaaaaatgtcattta
caagctgatccatcaaatgcaatccgtaattcgattagacaatttgctatagaaaatgat
attactttctttaatacgcgtcatcaaactggattgttacgtacattaatgttacgaact
tcttctaacggagaagtaatggtattgattcaattttatcaagaagatgtagaaaaacgt
gaattattattaaattatgtgaaagagacgtttccagaaattacgtcgttattatatgta
atcaacggaaaaggaaatgatacgatttacgatcaggaagtgatttgcttcagcggacgc
gatcatatttttgaggaaatggaaggtttgaagtttaaaataaacgcaaaatcattctat
caaacaaattcagatcaagcatacgaattatataaaattacacgtgactttgcagattta
aaaggcgatgaactcgtatacgatttatacacaggaacaggaacgattgcacaatttgtc
gcaaaaaaagcaaaaaaagtagttggagttgagtcggttccggaagcaattgaagcagca
aaagaaaatgcggaattaaacaatattacgaataccgaattttatgttggtgatatgaaa
aaggtgtttaacgcaaagttcatttccacacatggaacgcccgatattattattaccgat
ccgccacgtgacggaatgcacggcgatgttgtgcaacaaattataaacattgcaccaaaa
aaaatagtctatgtaagttgtaatagcgccacacaagcgcgcgatttagctttgatggac
gcactttataaagtaaccaaagtacaagccgttgatatgtttccgcaaacgcatcacgtt
gaaaatgttgtacttttagaaagaagaaattaa
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