Kordia antarctica: IMCC3317_16640
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Entry
IMCC3317_16640 CDS
T06371
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
kan
Kordia antarctica
Pathway
kan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3317_16640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kan03021
]
IMCC3317_16640
03019 Messenger RNA biogenesis [BR:
kan03019
]
IMCC3317_16640
Transcription machinery [BR:
kan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IMCC3317_16640
Messenger RNA biogenesis [BR:
kan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IMCC3317_16640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QHI36304
UniProt:
A0A7L4ZK64
LinkDB
All DBs
Position
2005725..2007482
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AA seq
585 aa
AA seq
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MLEISELKSKKLPELQEIAKTLAVPKYRTLKKLDLIYKILDHQAINPESVAPIIKAEPKA
TETTDADSSKRRRIKRDPNPRTEKKDTAPKAIPAKAVAPKAVAPKVVPSESKPEIKKPEA
RDPEKVTTPAPRKLNKPVRKAPEKNLNTPVHPKKEDSKKSGNEQSNSNKQQPSSHKPKKD
HLQQSNKHTNKKDHSQKNNGNKDQRNRYREPDFEFDGIIESEGVLDIMQDGYGFLRSSDY
NYLSSPDDIYVSQSQIRLFGLKTGDTVLGIVRPPKEGEKYFPLIKVSKINGQDPQVVRDR
VAFEHLTPLFPDEKFNLAERQSTISTRIMDLFAPIGKGQRGMIVSQPKTGKTMLLKDVAN
AIAANHPEVYQIVLLIDERPEEVTDMQRNVKGEVIASTFDKEATDHVKVANIVLEKAKRL
VECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIEGGGSL
SIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLD
ENTIQRMWVMRKYLADMNPVEAMEFINQRIKQTRNNEEFLISMNT
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaatttcagaattaaaaagcaaaaaactccccgaattacaggaaatagctaaa
actttagctgtcccgaagtataggactttaaaaaaactagatttaatttataagatatta
gatcatcaagctataaatcctgaatcagtagcgcctattataaaagctgaaccaaaagct
actgaaactacggatgctgattcaagcaaaagaaggcgaattaagagagatcctaatcca
agaactgaaaagaaagatacggctccaaaggctattccagcgaaagctgttgctccaaaa
gctgttgctccaaaggttgttccttcggaatctaagcctgaaataaagaagccagaagca
agagatcctgaaaaagtaactactccagctcctagaaaactgaataaaccagttcgtaaa
gctccagaaaagaatttgaatacacctgttcatcctaagaaagaggattcaaagaagtct
ggaaatgagcaatcaaacagtaataagcaacaaccaagtagtcataaaccaaagaaagat
catcttcagcaaagtaataagcatacgaataagaaagatcattcacagaagaataacgga
aataaagatcagcgtaatcgctaccgcgagcctgattttgagtttgacggaattattgaa
agtgaaggcgttttggacattatgcaagatggatatggctttttgagatcatctgattat
aattatttgtcatctcctgatgatatttatgtatctcaatcgcaaattcgtttgttcgga
ttgaaaactggagatactgttttaggtattgttagaccgccgaaagaaggagaaaagtat
tttccactgattaaggttagtaaaattaacggacaagatccgcaagtggtaagagatcgt
gttgcttttgagcatttaacgccattatttccagatgagaaatttaatttagcggaacgc
caaagcacaatttctacacgaattatggatttattcgctcctattggaaaaggacaaaga
ggaatgattgtatcgcaaccaaaaactggtaaaaccatgttattgaaagatgttgccaat
gcaattgctgcgaatcatcctgaagtttatcaaattgttttattgattgatgaacgtcct
gaggaagtaaccgacatgcaacgtaatgtaaaaggagaagtaattgcttcaacttttgat
aaagaagctacagatcacgttaaagtggctaatattgtattagaaaaagcaaaacgtttg
gtagaatgtggtcatgatgtagtaatcttgttagattctatcacaagacttgctagagct
tataacaccgtacaacctgcttctggaaaaatattaagtggtggtgttgatgcaaatgct
ttacataaaccaaaacgtttctttggagctgcccgtaatattgaaggtggcggatcatta
tctattattgcaactgctttaacagaaactggttctaagatggatgaggttatttttgaa
gagtttaaaggaactggtaacatggaacttcaattggatcgtaagatttctaatcgtaga
attttccctgctattgatcttacttcttcaagtacgcgaagagatgatttattattagat
gaaaacacgattcaacgtatgtgggtaatgcgtaagtatttagctgacatgaatcctgta
gaagctatggaatttatcaatcaacgaattaaacaaacaagaaataacgaagagttcttg
atttctatgaacacatag
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