Kordia antarctica: IMCC3317_29810
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Entry
IMCC3317_29810 CDS
T06371
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kan
Kordia antarctica
Pathway
kan03410
Base excision repair
kan03430
Mismatch repair
kan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IMCC3317_29810 (recJ)
03430 Mismatch repair
IMCC3317_29810 (recJ)
03440 Homologous recombination
IMCC3317_29810 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kan03400
]
IMCC3317_29810 (recJ)
DNA repair and recombination proteins [BR:
kan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IMCC3317_29810 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IMCC3317_29810 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMCC3317_29810 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QHI37601
UniProt:
A0A7L4ZM60
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All DBs
Position
3494043..3495731
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AA seq
562 aa
AA seq
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MRWTLKPKPETHKIEHLVDVLQVNETVATLLLQRGIETYEDAKNFFRPSLEHIHDPFLMK
DMNLAVARIDKAITNGENIMVYGDYDVDGTTSVALVSSYLKTIYLNVATYIPDRYEEGYG
LSFLGIDFAEDNDISLIITLDCGIKAVDKVAYANEKNIDIIICDHHRPGNELPKAVAILD
PKRDDCNYPYDELCGCGVGFKLIQALGSKRGQTITDLFPYLDLVATAIGADIVPLTGENR
ILAHFGMQVINSAPRAGFKAIIDQLKKKELTITDVVFVIAPRINAAGRISQGLHAVELLT
ENDLEVAKQYAASIETYNTERRALDQEITTAAFQQIEKLQEQERFTTVVYDENWHKGVIG
IVASRLIETYYRPTLVFTKSGNKLAASARSVKGFDVYNALEQCQEHIIQFGGHKYAAGLT
LKEENYQAFKDAFEEVVKNSIDKNLLTPEILIDKEIALKEITPKFYRILKQFSPFGPQNM
SPTFMSTQLQDTGWAKCVGAEEDHLKIKAIQRKSKAISGIGFNLGEKLSKVQNKNLFDAV
YSVDENEWNGTVTLQLRLKDIR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacattaaaaccaaaaccagaaacacataaaattgagcatttagtagacgta
ttgcaagtcaatgaaacggttgcaacactactattgcaacgtggaattgaaacctatgaa
gatgccaaaaacttttttcgtccttcgttagaacatattcacgatccgtttttaatgaaa
gatatgaatctcgctgtcgcgcgaattgacaaagcaataaccaatggcgaaaatataatg
gtgtatggcgattatgatgtagacggaacaacttcggttgcgttggtttcttcatactta
aaaaccatttatctaaatgtagctacttatattccagatagatatgaagaaggttacgga
ctttcctttttaggaattgactttgcagaagacaatgatatttcattaattatcacactc
gattgtggcataaaagccgttgataaagttgcatacgcaaacgaaaaaaacattgatatc
atcatttgcgatcatcacagacctggaaacgaattgccaaaagcggttgcaattttagat
ccaaaacgagatgattgtaattatccgtatgacgaattgtgcggttgtggcgttggcttc
aaactcattcaagcattaggctcaaaaagagggcaaaccattactgatttatttccgtat
ttagatttagtcgcaacagcaattggagcagacattgttccgcttacaggcgaaaacaga
atcttagcacattttggaatgcaagtcattaattcggcaccaagagcaggatttaaagca
attatagatcaactaaaaaagaaagaattaacaattacagatgttgtttttgtaatagct
ccaagaattaacgctgcaggaagaataagtcaagggttacatgcggttgaattacttacg
gagaacgatttggaagttgccaaacaatacgcagcgtccattgaaacctacaacacagaa
cgtcgcgcgctcgatcaagaaattacaacagccgcttttcaacaaatagaaaaattacaa
gaacaagaacgttttacaacggttgtgtacgatgaaaactggcataaaggcgtcatcgga
attgtcgcttcacgcttaatagaaacctattatcgtccaacattagtgttcacaaaaagt
ggcaataaattagccgcttctgcacgttctgtcaaaggattcgatgtttacaatgcctta
gaacaatgtcaggaacatatcatacaatttggtggacataaatatgccgcaggattaacc
ttgaaagaagaaaattatcaagcatttaaagatgcgtttgaagaagttgtgaaaaattcg
attgataaaaatctgctaacaccagaaattctaattgataaagaaatcgcactcaaagaa
attactccaaaattctatagaatcttaaaacaattttcaccatttggtccgcaaaatatg
agtccgacttttatgagtacacaattacaagatacaggttgggcaaaatgtgttggcgca
gaggaagatcatttaaaaataaaggcgatacaacgaaaatcaaaggcgatttctggaatc
ggtttcaatctgggcgaaaaactttccaaagtgcaaaacaaaaatctatttgacgccgta
tattccgttgacgaaaacgaatggaacggaactgtgactttgcaattacgtttgaaagat
attagataa
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