Kordia antarctica: IMCC3317_30260
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Entry
IMCC3317_30260 CDS
T06371
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kan
Kordia antarctica
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kan03016
]
IMCC3317_30260 (rtcB_2)
Enzymes [BR:
kan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IMCC3317_30260 (rtcB_2)
Transfer RNA biogenesis [BR:
kan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IMCC3317_30260 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
IMCC3317_30260 (rtcB_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHI37645
UniProt:
A0A7L4ZM34
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All DBs
Position
3537379..3538776
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AA seq
465 aa
AA seq
DB search
MAKLKLRGKDLIEIGYPQKGKVISIAIDAMLKHYRRERKDKVIQRLKSVLKNPEKYLGDG
IFGKIAEELTTPVHIEAKQLETKRAPFTIFGENGIQEEAKHQLYTALKLPIARAGALMPD
GHAGYGLPIGGVLATKNAVIPYGVGVDIGCRMCLSIYDIPASYLEGHKDKYVHMLQEHTK
FGGFETHRSINDHEIFERTEFKEIPTVKKLFKKAYRQLGSSGGGNHFVEFGIVDVSDVNN
EFNVPVGKYLGILSHSGSRGMGANIAKHYTKLAIQQTPLPGEAKNLAWLDLDTHDGQEYW
LAMNLAGDYASACHHDIHKRLGKALGSRPLAMVENHHNFAWKEIVNGEELIVHRKGATPA
QKGVLGIIPGSMTAPGFIVRGTGNVHSLQSASHGAGRQLSRRKAKQTITQSDIKKQLKDH
GVTLIGGGIDEAPMAYKNIHHVMANQTELVEVVGSFTPKIVRMDR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaaattacgaggcaaagacctcatcgaaataggatatcctcaaaaggga
aaagtaattagtattgcaattgatgcgatgttaaaacattacagacgcgaacgaaaagac
aaagtaatacagcgtttaaaatcagtacttaaaaatcctgaaaaatatttgggagatgga
atttttggcaaaatcgctgaagaattgacaactcctgtacacatagaagcaaaacaatta
gaaacgaaacgagcgccgtttaccatatttggcgaaaacggaattcaagaagaagcaaaa
caccaattatacacagcgttaaaattaccaattgcaagagcaggcgcattaatgccagat
ggacatgcaggttacggtttgccaattggcggtgtattggcaactaaaaatgctgtaatt
ccgtatggagttggcgtagatatcggttgcagaatgtgtttgtcaatctatgatattcca
gcttcgtatttggaaggtcacaaagacaaatatgtacatatgctgcaagaacataccaaa
tttggcggttttgaaacgcatagaagtatcaacgatcatgaaatttttgagcggacggaa
tttaaagaaattccaacggtaaaaaaattgttcaaaaaggcgtatcggcaattaggttct
tcaggtggcggaaatcactttgtggaatttggaattgtagacgtttcggatgtaaacaac
gaattcaatgttcctgtcgggaaatatttaggaattctgtcacatagcggatcgcgcgga
atgggcgcaaatattgctaagcattacacaaaattagcaatacaacaaacgccattgcct
ggagaagcgaaaaacttagcgtggctcgatttggatacgcacgacggacaagaatattgg
ttggcaatgaatttagcaggcgattatgcttcggcgtgtcaccatgatattcacaagcgt
ttgggaaaagcattaggttcaagaccgttagcaatggtggaaaatcatcacaattttgct
tggaaagaaatcgtaaacggagaagaattgattgtacacagaaaaggagcaacgccagca
caaaaaggtgtgttaggaattattccaggatctatgacagcgccaggatttattgttcga
ggaacaggaaacgtgcattcgttgcaatcggcttcacatggtgcaggacgacaattatca
aggcgaaaagctaagcaaaccatcacgcaaagtgacattaaaaaacaattaaaagatcac
ggtgtaactttgattggtggcggaattgacgaagcgccaatggcatataaaaacattcat
catgttatggcaaaccaaacagaattagtggaagttgtcggaagttttacgccaaaaatt
gtgcgcatggatagatag
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