Kaistella sp. 97-N-M2: L0B70_02005
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Entry
L0B70_02005 CDS
T08605
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kaq
Kaistella sp. 97-N-M2
Pathway
kaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0B70_02005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaq03019
]
L0B70_02005
Enzymes [BR:
kaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0B70_02005
Messenger RNA biogenesis [BR:
kaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0B70_02005
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
PH_PLEKHM2
P-loop_SecA
Pallilysin
Motif
Other DBs
NCBI-ProteinID:
UJF30195
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All DBs
Position
complement(414724..415866)
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AA seq
380 aa
AA seq
DB search
MSFESLGLSHNIIKSVRKLGFLKPFLIQEQTIPVILSGKDLIGIAQTGSGKTACFVMPIL
EKIQNEDVKKDRNIQVLVLAPTRELVIQIDEVFRAFTENLKREIRTMAVYGGVSINPQMK
GLFGVEILVATPGRLLDLIEHKALSISQIRYLVIDEADKMFQLGFEEEMNKLFAMMPAMK
QTTMFSATLNEKVEEIKKRLTIEPVLVEIKQQEINIDQIEQIAYHVTDETKGPFLRFLIK
EQNIKQALIFTSSTRIADHLVEKLKKNKIPATAIHGQKSQGARSTNLKNFKEGETQILVA
TDLIGRGIHIESLNFVINYELPRSPLDYVHRIGRTGRANESGTAITLVTDGELQHFRTIQ
KKMGKKVDLIYTDNVDLHGY
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctcttggcttatcacacaacattatcaaatccgttcggaaactgggt
tttctaaaaccttttcttattcaggagcaaaccattccggtcattttatccggcaaagat
ctcataggaattgcgcagacgggctccggaaaaaccgcgtgttttgtgatgccgattctg
gaaaaaattcaaaacgaagatgtgaaaaaggaccgtaatatccaggttttggtgttggcg
cccacgcgggaactcgtgattcagatcgacgaggtttttcgggcgtttacggaaaattta
aaaagagaaatccgaacgatggcggtttatggtggcgtttctattaatccccaaatgaaa
ggcctgtttggcgtcgaaattttggttgcaacacccggaagattgctggatctgatcgag
cataaagctttgagcatttcgcagatccgctatttggttattgatgaagccgacaaaatg
tttcagttaggttttgaagaagagatgaacaaacttttcgccatgatgcctgcgatgaaa
caaacgaccatgttttccgcgacgttgaacgaaaaagtggaggagattaaaaaacgtttg
acgattgagccggttttggtggaaattaagcagcaagaaatcaatatcgatcaaattgaa
cagatcgcctatcacgttacggacgaaaccaaagggcctttcctgcgttttttgattaaa
gaacaaaacattaagcaggctttaatttttacgtcttccacaagaattgcagatcatttg
gttgaaaaactgaagaaaaataaaattccagccacggcgattcacggccagaaatcacaa
ggtgcgcgaagcacgaatctgaaaaacttcaaagagggagaaactcagattctggtcgcc
accgatcttatcggacgcggaattcatatcgaatctctaaacttcgtgatcaactacgaa
ttgcctcggtcgccgttagattatgttcaccgaattggcagaacgggccgcgcgaacgaa
tccggaaccgcaattacgttggtgacggacggtgaactgcagcactttcggaccattcaa
aaaaagatgggcaaaaaagtggacctgatttataccgacaacgtggatctgcacggttac
taa
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