Klebsiella africana: LGL98_15665
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Entry
LGL98_15665 CDS
T07696
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kar
Klebsiella africana
Pathway
kar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGL98_15665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kar03400
]
LGL98_15665 (mfd)
Enzymes [BR:
kar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGL98_15665 (mfd)
DNA repair and recombination proteins [BR:
kar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LGL98_15665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UDD38667
LinkDB
All DBs
Position
3199293..3202739
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLPDKAANTNLGYQTLPD
IAVQAQNKAPLDNLRRFLEAFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLEEATG
NGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggtcaaagccggcgatcagcgccagcttggc
gagttgaccggcgcagcctgcgccaccctggtggcggagatggccgaacgccacaacggc
ccggtggtgctggtggcacctgacatgcaaaacgcgctgcgtctgaacgacgaaatcagg
cagtttaccgacagcatggtgatggggctggcggactgggaaacgctcccttacgacagc
ttctcgccgcatcaggacattatctcctcccgtcttgccaccctttaccagttacccacc
atgcagcgcggcgtgctgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgatcagctggagggggctggctaccgccatgtcgatcaggtgatggagcacggc
gaatatgccactcgcggcgcgctcctcgacctgttcccgatgggtagcgatcagccctac
cgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgtcgacagccag
cgcacgctggaggaagtggcggccattaatctgctgccggcgcacgagtttcccaccgac
cagaccgccatcgagctgttccgcagccagtggcgcgatcgctttgaggtgaagcgcgat
gccgagcatatctatcagcaggtcagcaaagggacgctacctgccggtatcgaatactgg
cagccgctgttcttcagcgagccgctgccgccgctatttagctatttcccggccagcacg
ctgatcgttaacaccggcgatctcgaggccagcgcggagcgattccagaatgaagcccgc
gcccgctttgaaaaccgcggcgttgacccgatgcgcccgctcctgccgcctgagctgcta
tggctgcgcagcgacgagctgttcagcgaactgaaaaaatggccgcgcgtacagctgaaa
accgagcgcctgccggacaaagcggcgaataccaatttaggctaccagacgctgccggac
atcgccgtccaggcacaaaacaaagcgccgctggataatctgcgccgcttcctcgaagcg
tttaccggcccggtgatcttctcggtggaaagcgagggtcgccgtgaagcgctgagcgaa
atgctggcgcggattaaagttgcgccaaaacacgtcctgcgtctggaggaagccaccggc
aacggccgttatctgatgattggcgccgccgagcacgggtttatcgacagccagcgcggc
ctggcgctgatttgcgagagcgacctgctcggcgagcgggtcgcgcgccgtcgtcaggat
tcccgtcgcaccattaaccccgacaccctgattcgcaaccttgccgaactgcatatcggc
cagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatgactaccctggaa
gccggcggcatcaccggcgaatacctgatgctgacctacgccaacgatgccaaactatac
gttccggtatcgtccctgcatcttatcagccgctacgccggtggggcggaagaaaatgcc
cccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggcgaaggcgggt
tttgcctttaaacacgaccgcgaacagtatcagctgttttgcgatggcttcccgtttgaa
actacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatgtgccaaccgctg
gccatggatcgcctggtgtgcggcgatgtgggcttcggcaagaccgaagtggccatgcgc
gccgcttttctcgccgtggagaaccacaagcaggtggcggtactggtgccgaccaccctg
ctggctcagcagcactatgacaactttcgcgatcgtttcgccaactggccagtgcgcatc
gaaatgctctcccgcttccgcagcgctaaagagcaggcacagatccttgagcaggccgcg
gaaggcaaaatcgatatcttaatcggcactcacaagctgttgcagagcgaagtgaagctg
cgcgacctcgggctgctgatcgtcgacgaagagcaccgctttggcgttcgtcacaaagag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cgaacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccgccg
gcgcgccgtctggcggtgaagaccttcgttcgcgaatacgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctgtttaatgacgttgag
aacatccagaaagccgccgacaagctggcggagctggtgccggaggcgcggatcgccatc
ggtcacggtcagatgcgggagcgcgaactggagcgggtgatgaatgacttccatcaccag
cgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctgcaccagctgcgc
ggccgcgttggccgttcgcatcaccaggcctatgcctggctgctgacgccgcatccgaaa
gcgatgaccactgatgcgcaaaagcgcctcgaggccattgcgtcgctggaagatctcggc
gccggctttgcgctggcgacccacgatctggagattcgcggagccggggagctgcttggg
gaagatcagagcggacagatggaaaccatcggtttctccctgtatatggagctgctggag
aacgcagtcgatgcgctgaaagccgggcgcgaaccttcgctggaagatctgaccagtcag
cagacggaggttgaactgcgcatgccttccctgctgcctgacgatttcatccccgacgtc
aatacgcgtctgtcattctataagcgcattgccagcgccaaaaacgaacaggatctggag
gagatcaaagtcgagcttatcgaccgttttggccgcctgcccgatgccgcccgcaacctg
ctggatatcgcccgtctgcgtcagcaggcgcagaagctggggatccgtaagctggaaagc
aacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaatccggtgtggttg
atcggcctgctgcagaagcagccgcagcacttccgcctggacgggccgacgcgcctgaaa
ttcatgcaggacctggaggagcgtaagacgcggatggactgggttcgccagtttatgcgt
cagctggaagagaacgccgtcgcctga
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