Klebsiella africana: LGL98_15820
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Entry
LGL98_15820 CDS
T07696
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kar
Klebsiella africana
Pathway
kar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGL98_15820 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kar03019
]
LGL98_15820 (rne)
03009 Ribosome biogenesis [BR:
kar03009
]
LGL98_15820 (rne)
Enzymes [BR:
kar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LGL98_15820 (rne)
Messenger RNA biogenesis [BR:
kar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGL98_15820 (rne)
Ribosome biogenesis [BR:
kar03009
]
Prokaryotic type
rRNA processing factors
LGL98_15820 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UDD38696
LinkDB
All DBs
Position
3229018..3232251
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGEDEPAERKRPEQPALAAFVMPDAPPA
PMPEEPAAAPVAAATPVAPAAPAQPGLFSRFFGALKNIFSGAEETKPAEVQVEKKAEEKP
ERPQERRKPRTNNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRRNRR
EKQPQSVETRDVRQTAGDDTEKAKSRDEQQPRRERTRRRNDDKRQAQQEVKAQTREEPVV
QETEQEERVQTLPRRKPRQLSQKVRIESAVAEQAAENVPEAVVAEVVAPRSEPVQAELPA
VVENVADHDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVVRPQDQQPEEVQNQDASIEETIAAVAPPVAAVETVTAAPVTVEPST
MEPVTAEPVVVEPVAAAEPVVVDTADVAAPAAVEPASQAPVTEAPVMEEPVAIAPVAIDA
EPVTVEPEVVETAPVVETPVETIAPVAETTVEAPVVDTVPAEPVKAEAPVSQPVVVAGHR
HATAPMTRAPAPDYVPEAPRHSTWVRPPFAFDGKGAAGGHSATHIATAEPTRPQPVE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaagatcacccgtattgaacccagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgct
aattacaatgcgcacggccgtcctaatatcaaagacgtcctgcgtgaaggtcaggaagtt
atcgtacagattgataaagaagaacgtggcaacaaaggcgctgcgctcactacctttatc
agcctggcaggcagctatctggtcctgatgccgaacaacccacgcgcggggggaatttcc
cgccgtatcgagggcgacgaccgcactgaactgaaagaagcgctggcgagcctggagctt
ccggacggtatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtcattgtccgcgccttccgtgac
tatctgcgccaggatatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcgctgggtcgtccggatttcagcagtaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagatcgaatctcagattgaatccgccttccag
cgcgaagtccgtctgccgtccggtggctctatcgttatcgacagcactgaagcgctgacc
gcgatcgatatcaactccgcccgcgccacccgcggcggcgacatcgaagagacggccttc
aacaccaacctcgaagcggcggacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgactttatcgatatgaccccggttcgccaccagcgagcggtggag
aatcgtctgcgcgaagccgtccgtcaggaccgggctcgcattcagatcagccatatctcg
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggcgaatccagc
caccacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccatcgtgccggtaccgatcgcctcgtatctgctgaacgaaaaacgtgccgcagtgagc
gcaattgaatcccgccagggcgatgtccgcgtcattatcgtgccaaacgacgaaatgcag
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagagacctcaacgctgagctac
ctgctaccgaagctgcatgaagaagagatggcgctgcctggcgaagatgaaccggcagaa
cgcaaacgtccggaacagcctgctctggccgcctttgtcatgcctgacgcgccgccggcc
ccgatgccggaagaacctgctgccgcacctgtcgccgcagccacaccggtcgcgccggcc
gcgccggcgcagccgggactgttctcacgcttcttcggcgccctgaaaaacatcttctct
ggcgctgaagaaaccaagccggctgaagttcaggtcgaaaagaaagcggaagaaaaaccg
gagcgtccgcaggagcgccgtaaaccgcgcactaacaatcgccgcgatcgcaacgaccgc
cgtgataaccgcgataatcgtgataaccgcgataatcgtgataaccgcgacacccgtgcg
gacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagagaatcgtcgtaaccgtcgc
gagaaacagccgcagagtgtagaaacccgtgacgttcgccagaccgcaggcgacgacacg
gagaaagcgaaatcccgtgacgagcagcagccgcgccgcgaacgtacccgccgccgtaat
gacgacaaacgtcaggcgcagcaggaagtcaaagcgcagactcgcgaagagccggtagta
caggagacggagcaggaagagcgtgtgcagactctgccgcgccgtaaaccgcgccagctc
tcgcagaaagtgcgcattgagtcagctgtcgctgagcaggctgccgagaacgtaccagaa
gccgttgtggctgaagtcgtcgccccgcgcagcgagccggtgcaagccgaactgccggcg
gtagtggaaaacgtggcggaccacgacgaaaatggcgaatcccgtgaagcgaacggtatg
ccgcgtcgctcacgtcgctccccgcgtcatctgcgcgttagcggtcagcgtcgccgtcgc
tatcgtgacgaacgctacccgacccagtcgccgatgccgctgactgtggcctgcgcatcg
ccggaaatggcttccggtaaagtctggatccgctacccggttgttcgtccgcaggatcag
caacccgaagaggttcagaatcaggatgccagcatcgaggaaaccatcgcggccgtggcg
cccccggttgccgccgttgaaaccgttaccgctgcgccagtgaccgtcgagccgagcacc
atggagccagtaaccgctgagccggtggtcgtcgagccggtcgccgccgctgagccggtg
gtggttgatactgcggacgttgccgcgccagcagctgtcgagccagcgtcgcaggcgccg
gtgaccgaagccccggtgatggaagagcctgtggccatcgcgccagtggcgatcgacgcc
gagccggtaacggtcgaacctgaagtggttgaaacggcaccggtggttgaaacgccagtg
gaaaccatcgcgccggtggcagaaaccaccgtggaagcgccggtcgtcgacacggtacct
gccgagccggtaaaagccgaagccccggtgagtcagccggtagtggtggcgggtcatcgc
catgccaccgcgccaatgacccgtgcgccagcgccggactacgttccggaagcgccgcgc
catagcacctgggtgcgcccgccgttcgcctttgatggtaaaggcgcggccgggggccat
agcgcaacacatatcgctaccgctgaaccgactcgcccacagcccgtcgaataa
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