Klebsiella africana: LGL98_20690
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Entry
LGL98_20690 CDS
T07696
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
kar
Klebsiella africana
Brite
KEGG Orthology (KO) [BR:
kar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kar03019
]
LGL98_20690 (hrpB)
Enzymes [BR:
kar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LGL98_20690 (hrpB)
Messenger RNA biogenesis [BR:
kar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LGL98_20690 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_22
DUF2732
Motif
Other DBs
NCBI-ProteinID:
UDD39578
LinkDB
All DBs
Position
complement(4282656..4285085)
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AA seq
809 aa
AA seq
DB search
MSSLPVAAVLPELLSALQHAPQVLLNAPTGAGKSTWLPLQILAEGNIAGRIILLEPRRLA
ARNVAQRLAELLGEKPGETVGYRMRAETCVGPQTRLEVVTEGILTRMIQRDPELTGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQRLLPEAPVVVSEGRA
YPVERRFSPLSAHQRFDEAVAVAAADLLRQEPGSMLLFLPGVGEIQRVQEQLTERVAEDV
ILCPLYGALPLSEQRKAILPAPAGKRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDP
RTGLTRLVTQRISQASMTQRAGRAGRLSPGICLHLLGKEQAERAAAQSEPEILHSDLSAL
LLELLQWGCHDPAALAWLDQPPAVNLAAARRLLETLSALDGERLSAFGRKMAALGNEPRL
AAMLAAAQTDDEAATAAKLAAILEEPPRGGLVDLGAIFSRQQANWQQRAQQLMKRLARRS
GQPDAGRMAGLLASAFADRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQG
SASPDARMLLALPVEIGELIAARPELAQRSDTVEWDEAQGTLKAWRRTVIGQLVIKTQPL
AKPSEAELHQAMLNGIREKGLGVLNWTPEAEQLRLRLHCAAQWLPEEAWPAVDDASLLAS
LEAWLLPQMNGVHSLRALKALDLRQALQDWLPWPLRQKLDRELPTHYTVPTGSRLAIRYH
AENPPALAVRMQEMFGEATNPVIAEGRVPLVLELLSPAQRPLQITRDLSAFWQGSYREVQ
KEMKGRYPKHVWPDDPANAAPTRRSKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattgccggttgccgctgtcctcccagaactgttatccgccctgcagcatgcg
ccgcaggttttgctcaacgcgccgaccggcgccgggaagtcgacctggctgccactgcag
atcctcgccgagggcaacatcgcgggacgcattatcctgctcgagccgaggcggctggcg
gcgcgcaatgtcgcgcagcggctggctgaactgctcggcgaaaaaccgggggaaaccgtg
ggttaccgtatgcgcgccgaaacctgcgtcggaccgcagacccgcctggaggtggtcacg
gaggggatcctgacgcgcatgatccagcgcgatcccgagctgacgggcgtggggctggtg
atcctcgatgagtttcacgagcgcagcctgcaggcggatctggcgctggccctgctgctc
gacgtacagcaggggttgcgtgacgatctcaagctgctgattatgtcggcgaccctcgat
aacgatcgcctgcagcgtctgctgcctgaggcgccggtggtggtttcggaggggcgcgct
tatccggtggagcgtcgcttcagcccgctctccgcgcaccagcgttttgatgaggcggtg
gcggtcgcggcggcggatctcctgcggcaggaaccgggatcgatgctgctatttctgccc
ggcgtcggcgagatccagcgcgttcaggaacagctgacggagcgcgtggcggaagatgtc
attctctgcccgctgtatggcgcgttgcccttaagcgaacagcgcaaagcgatcctcccg
gcgcccgccgggaagcgcaaagtggtgctggctaccaatattgccgagaccagtctgacc
atcgaggggatccgcctggtggtcgacagcgcccaggagcgggtcgcccgctttgacccg
cgcaccggcctgacccggctggtgacgcagcgcatcagccaggcatcaatgacgcagcgc
gccggccgcgccggtcgtctctccccggggatctgcctgcatttgctcggcaaagaacag
gcggaacgggcggcggcgcagagcgaaccggagatcctgcacagcgatctgtcggcgctg
ttgctggagctgctgcagtggggttgccacgatccggccgcgctggcctggctggatcag
ccgccggcggtgaacctggccgccgcgcgccgcctgctggagacgctgtcggcgctggac
ggcgagcggctgtcggcgtttggccgcaaaatggcagcgctaggcaacgagccgcggctg
gcggcgatgctggccgccgcgcagaccgatgacgaggcggcgacagcggcaaagctggcg
gcgatcctcgaggagccaccgcgcggcggactggtggatttgggggccatcttttcccgt
cagcaggccaactggcagcagcgagcgcagcagctgatgaagcgcctggcccgccgcagc
ggccagcccgatgccgggcgaatggcggggctgctggcgtcggccttcgccgatcgcatc
gcccgccgccgcggtcaggaggggcgctaccagctggcgaacggcatgggcgcgatgctg
gacgccgacgacgcgctgggccgtcatgaatggcttatcgctccgctgctgctgcagggc
agcgcttcgccggatgcccgcatgctgttggctctgccggtggaaatcggtgagctgatc
gccgcccgccctgaactggcgcaacgttccgacacggtggagtgggatgaggcccagggg
acgctgaaagcctggcggcggacggtgatcggccagttggtgatcaagacccagccgctg
gcgaagccctctgaggcagagctgcatcaggcgatgctcaacggtattcgtgagaaaggc
ctcggggtgctcaactggacgccagaggctgagcagctgcgcctgcggttgcactgtgcg
gcgcagtggctgccggaagaggcatggcccgcggtggatgacgcttcgctactggcctcg
ctggaggcatggctgttgccgcagatgaacggcgtccattccctgcgggcgctgaaggcg
ctggatctgcgtcaggcgctacaggactggctgccgtggccgctgcgccagaagctggat
cgcgaactgccgacacactataccgtgccgaccggcagccgcctggcgatccgctaccat
gcggaaaacccgccggcgctggcggtgcgtatgcaggagatgttcggcgaggccacgaac
ccggttatcgccgaggggcgagtgccgctggtgctggagctgctgtcgcccgcccagcgt
ccactgcagatcacccgcgatctgagcgccttctggcaagggagctaccgtgaggtgcag
aaagagatgaagggacgctatccgaagcacgtctggccggacgatccggccaacgccgcc
ccgacccgccgcagcaaaaaatattcgtag
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