Kluyvera ascorbata: KATP_04550
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Entry
KATP_04550 CDS
T06881
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kas
Kluyvera ascorbata
Brite
KEGG Orthology (KO) [BR:
kas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kas03019
]
KATP_04550
Messenger RNA biogenesis [BR:
kas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KATP_04550
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
BCA37933
LinkDB
All DBs
Position
477917..479857
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AA seq
646 aa
AA seq
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MRLTTKFSAFFTLLTGLTIFVTLIGSSLSFYNGIQYKIANRVQAVATVLDNRLINTPFDK
LDHQLDEIMVPLDIVRIDFTLNGKALFHHSRTSSYQPVGSHYQFREMEVPSLKHPGMKIH
LVYQDPMANYFRSLMTTAPLTITIAFMVLVVFIAVRWLRRQLAGEELLELRSIRILNGER
GPKAKGNIHEWPARTSSALDMLLSEIQFAGEQRSRLDTLIRSYAAQDSKTGLSNRLFFDN
QLATLLDDQENVGSHGIVMMIRLPDFDFLRDNWGRAAAEEHVFTLINLLSTFIMRYPGAL
LARYRRSDFTVLLPHRTLKEADSIAGQLLKAIDGLPLAKILDRDDMMHIGICAWRGGQTT
EQVMEHAEAAVRNAVLQGSNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
NLDGSVHHRELMCRIFDGKEEVIAAEYMPMVLEFGLGEEYDRQQITRLIPFLGFWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRRRIIFELAEVDVCQHMTRLQPVVRLIHALG
VRVAVTQAGLALVSTTWIKQLEVELIKLDPVLVRNIEKRSQNQLLVQSLVEACKGTSIQV
FAAGVRSRGEWQELTKCGVFGGQGDFFAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagccttttttacgctcttaactgggcttaccatcttt
gtgacgttaattggctcctcactgagtttttataacggcatacagtacaagatagccaat
cgcgtgcaggccgtggcaacggtattggataaccgcctcattaacacaccgttcgataag
ctcgaccatcagcttgatgaaatcatggtgccgctcgatatcgtccgtatcgatttcacg
ctgaatggaaaggcgctgttccaccatagccgcaccagcagctatcagccggttggcagc
cactatcaattccgcgaaatggaagttccatcgctcaagcaccccggcatgaagattcat
ctggtctatcaggacccgatggccaactacttccgctcgttgatgaccaccgcgccgttg
accattacgattgcctttatggtgctggtggtctttatcgccgtgcgctggctgcgtcga
cagcttgcgggggaagagctgctggagctgcgctctattcgtattcttaacggcgagcgc
gggccgaaagccaaaggtaatatccatgaatggcccgcccgcaccagttcggcactggat
atgctactttctgaaattcagtttgccggagaacagcgcagccgcctggacacgctgatt
cgctcctacgcggctcaggactcgaaaactggcctcagcaaccgactgttctttgataac
cagctcgcaacgctactcgacgaccaggaaaacgtcggctctcacggtatcgtgatgatg
atccgcctgccggacttcgacttcctgcgcgacaactggggccgggccgcggcggaagaa
catgtctttacgctcatcaacctgctttccacctttattatgcgttatcccggtgcgctg
ctggcgcgctatcgccgcagtgactttaccgtcctgctaccgcatcgcaccttaaaagaa
gccgacagcatcgccgggcaactgctcaaagccattgatggcctgccgctggcgaaaatc
ctcgatcgcgatgacatgatgcacatcggcatttgcgcctggcgcggcgggcagaccacc
gaacaggtgatggaacacgccgaggcggcggtacgcaacgcggtgctacagggcagcaac
agttgggcgatttacgatgactcgctgccggagaaagggcgcggcaacgtccgctggcgc
actttgattgagcagatgctcagccgcggcggcccgcgcctttaccaaaaaccggcggtc
aacctcgacggcagcgttcatcaccgagaactgatgtgccgtatttttgacggtaaagaa
gaggttatcgccgcggaatatatgccgatggtgctggagtttggcctcggtgaagaatac
gaccgccagcagatcactcgtctgatcccattcctggggttttggcctgaggaaaatctg
gcaattcaggtgacggtcgagtcgcttattcgcccgcgtttccagcgttggctgcgtgat
actttgatgcagtgcgagaaatctcaacgtcgacggattatttttgaacttgcagaggta
gatgtctgtcaacatatgacgcgtttacagccagtcgtacgtttaattcatgcattaggc
gttcgggttgcggtaacgcaggcaggtttagccttagtcagtaccacttggattaagcag
cttgaggttgagttgattaagctagatccggtactggtgcgcaatattgaaaaacgcagt
cagaaccagctgttggttcaaagtctggttgaggcctgtaagggaacgtcgattcaggtt
ttcgccgccggagtccgcagccggggcgagtggcaagagctgaccaaatgcggagttttc
ggcggtcagggggatttttttgctgcttcccagccacttgactcaaatgtgaaaaaatat
tcgcaaagatattcggtttga
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