Kluyvera ascorbata: KATP_06460
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Entry
KATP_06460 CDS
T06881
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kas
Kluyvera ascorbata
Pathway
kas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KATP_06460 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kas03021
]
KATP_06460 (rpoD)
Transcription machinery [BR:
kas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KATP_06460 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
BCA38124
LinkDB
All DBs
Position
complement(680553..682397)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDDEDEDDDSDDSSDDDNSIDPELAREKFGELRTQYEITRDTIKAKG
RSHASAQEEILKLSEVFKQFRLVPKQFDYLVNSMRTMMDRVRTQERIIMKMCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVMRSLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtccagcgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcgccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgatgaagacgcggaagaa
gcggctgcacaggttctgtccagcgtggaatccgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgcgaaatgggtacggtagaactgctgacccgcgaaggcgaaatcgac
atcgctaaacgcatcgaagacgggatcaaccaggttcagtgctccgttgccgaataccca
gaagccattacctacctgctggaacagtacgatcgcgttgaagctgaagaagcgcgtctg
tctgacctgatcaccggtttcgttgacccgaacgctgaagaagatatggcgcctaccgcc
actcacgtcggttccgaactgtctcaggaagagatggatgacgacgatgaagacgaagac
gacgacagcgacgatagcagcgacgatgacaacagcatcgacccagagctggcgcgtgag
aaatttggcgagctgcgtactcagtacgaaatcactcgcgacacgatcaaagcaaaaggc
cgtagccatgccagcgctcaggaagagatcctgaagctgtctgaagtgttcaagcagttc
cgtctggtaccgaagcagttcgactacctggtaaacagcatgcgtaccatgatggaccgc
gtgcgtacccaggaacgtatcatcatgaagatgtgcgttgaacagtgcaaaatgccgaag
aaaaacttcatcactctgttcaccggcaatgaaaccagcgaaacctggttcaacgcggct
atcgcgatgaacaaaccgtggtctgaaaagctgcacgacgtaaaagaagacgttatgcgc
agcctgcagaaactgcagcagattgaagaagagaccggcctgaccatcgagcaggttaaa
gatatcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgcgcgaagaaagagatg
gttgaagcaaacttacgtctggttatttctatcgctaagaaatacaccaaccgtggtctg
cagttcctcgacctgattcaggaaggcaacatcggcctgatgaaagcggtagataagttt
gaataccgtcgcggctacaagttctccacctacgcaacctggtggatccgtcaggcgatc
acccgttctatcgcagaccaggcgcgcaccatccgtattccggtgcatatgattgagacc
atcaacaagctcaaccgtatctcccgccagatgctgcaagagatgggtcgtgaaccgacg
ccggaagagctggccgagcgcatgctgatgccagaagataagatccgtaaggtgctgaaa
atcgccaaagagccaatctccatggaaacgccaatcggcgacgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggactctgcgaccaccgagagc
ctgcgtgctgccacccacgacgttctggctggcctgaccgcccgtgaagcgaaagtcctg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacag
tttgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgt
cacccaagccgctctgaagtgctgcgtagcttcctggacgattaa
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