Kluyvera ascorbata: KATP_27860
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Entry
KATP_27860 CDS
T06881
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kas
Kluyvera ascorbata
Pathway
kas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KATP_27860 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kas03019
]
KATP_27860 (rne)
03009 Ribosome biogenesis [BR:
kas03009
]
KATP_27860 (rne)
Enzymes [BR:
kas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KATP_27860 (rne)
Messenger RNA biogenesis [BR:
kas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KATP_27860 (rne)
Ribosome biogenesis [BR:
kas03009
]
Prokaryotic type
rRNA processing factors
KATP_27860 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BCA40264
LinkDB
All DBs
Position
2965500..2968757
Genome browser
AA seq
1085 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAISAIESRQGDVRCIIVPNDQME
TPHYSVLRVRKGEETTTLSYLLPKLHEEAMALPVEEEFVERKLPEQPALATFVMPEVPPT
SATEKAAVAAAPQPKAAVAAAPAAPGLISRFFGALKKLFAGTPEAPVEAQPEKQEAKPER
QQERRKPRQNNRRDRNDRGDRNDRRGDRNERNDRGENAEGREPRENREGREDNRRNRREK
PQQTGEARENRQVAAVDDSEKAKSRDDQQQSRRERNRRRNDEKRQQPQEAKQQTREEQPV
VVDEAAQEERVQTMPRRKPRQLSQKVRIETPEQTAARELIADEPQQEEAPRTALAKVDLP
AVVDAQAQTEQDDSAEGRDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPELASGKVWIRYPVAQVQDQAIVDAPVEQEEIAQPIVAETVEQTVAPIAAAEPVAPA
AVEAPVQPAEAVEPETVVEPVAVAAAEEAAPAQEEAPAPVVAEAVAEEPVVVEEAPVQPV
AETTAPVEEANVEAPAAAEPVVEAPVVATPEVEAPVVVATPVVEAPVVAPTPVVEAPVAA
EPAPAAAHHATAPMTRAPAPTYVPEAPRHSNWVRPAFDFDGKGSAGGHSATHTATSGPTR
PQPVE
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgccctcgttgat
gggcagcgtctgtacgatctggatattgaaagcccaggacacgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgagccaagcctcgaagccgcatttgttgattac
ggcgccgaacgtcatggtttcctccctctcaaagaaattgctcgcgaatacttccctgct
aattacaacgctcatggccgtccgaatatcaaagacgtcctgcgcgagggtcaggaagtc
attgttcagattgataaagaagagcgcggcaacaaaggcgctgcactgaccacctttatc
agccttgcgggtagctatctggtgctgatgccgaataacccacgtgctggcggtatctcc
cgtcgcatcgaaggtgacgatcgcactgagctgaaagaagcgctggcaagcctcgagctg
ccagacggcatgggcttaatcgtacgtaccgcaggtgtgggtaaatccgccgaagcgctg
cagtgggacttaagcttccgccttaagcactgggaagctatccagaaagccgctgaaagc
cgcgctgctccgttcctgattcaccaggaaagtaacgtcatcgttcgtgccttccgcgac
tacctgcgccaggacatcggcgaaatcctgatcgacaacccgaaagtgatggaaatggcg
cgtcagcacatttctgcgctgggtcgtccagatttcagcagcaaaatcaaactgtacacc
ggcgaaatcccgctgttcagtcactaccaaattgaatcgcagatcgaatccgctttccag
cgtgaagtccgtctgccgtcaggcggctctatcgttatcgatagcaccgaagcgctgacc
gctatcgatatcaactccgcgcgtgcaacccgcggcggcgacatcgaagaaaccgcattc
aacaccaacctggaagcggccgatgaaatcgcccgtcagctccgcctgcgtgacctcggt
ggcctgatcgttatcgactttatcgacatgaccccggtacgccaccagcgcgcggttgaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtatccagattagccacatttcg
cgcttcggtctgctggagatgtcccgtcagcgtctgagcccttctcttggtgaatccagc
catcacgtctgcccacgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcac
gcaattgtcccagtgccaattgcctcttacctgctgaacgaaaagcgcgccgctatcagc
gccatcgaatcccgtcagggcgatgttcgctgcattatcgtgccaaacgatcagatggaa
actccgcactactccgtactgcgcgtgcgtaaaggtgaagagaccactaccctgagctac
ctgctgccgaagctgcatgaagaagcgatggcgctgccggtagaagaagagttcgttgag
cgtaagctgccagaacagccggcgctggcgaccttcgtgatgcctgaagtaccaccaacg
tctgcgacagaaaaagccgcggttgccgctgcaccacagccgaaagctgccgttgctgca
gcccctgccgcaccgggccttatctcccgcttcttcggcgcgctgaaaaaactgtttgcc
ggtacaccggaagcaccggttgaagctcagccagagaaacaggaagccaagcctgaacgt
caacaggaacgtcgcaaaccgcgtcagaacaaccgtcgtgaccgcaacgatcgcggtgac
cgtaacgaccgccgtggcgatcgcaacgaacgtaacgaccgtggtgaaaacgccgaaggc
cgtgaaccgcgcgaaaaccgtgaaggtcgcgaggacaaccgtcgtaaccgtcgtgaaaaa
ccgcagcagaccggtgaagctcgtgaaaaccgccaggttgctgccgtagacgacagcgag
aaagcgaaatcccgtgacgatcagcagcagtcccgccgcgaacgtaaccgccgccgcaat
gacgaaaaacgtcagcagccgcaggaagccaagcagcagacccgcgaagaacagccggtc
gttgtcgacgaagctgcacaggaagaacgcgttcagactatgccgcgccgcaagccgcgt
cagctgtcgcagaaagtgcgtatcgaaacccctgagcagaccgcagcgcgtgaactgatt
gcagatgaaccgcagcaggaagaagcaccgcgtaccgctctggcgaaagttgatctgcca
gccgttgttgacgcacaggctcagaccgagcaggacgatagcgctgaaggccgtgataac
aatggtatgccgcgtcgttcccgtcgttctccgcgtcacctgcgcgttagcggccagcgt
cgtcgtcgttaccgcgatgagcgttatccaacccaatcaccaatgccgctgaccgtcgcc
tgtgcgtcgccagaactggcatccggtaaagtgtggatccgctacccggttgcacaggtt
caggatcaggctatcgttgatgcaccggttgagcaggaagagattgcgcaaccaatcgtg
gcagaaaccgttgagcaaaccgtagcgcctatcgccgccgccgagccagtagcacctgcg
gctgttgaagcgccggtacagcctgcagaagcggttgagccagaaaccgtggttgaacct
gttgctgtcgctgctgctgaagaagccgcaccagcccaggaagaagcgcctgcgccagtt
gttgcagaagcggtagctgaagagccagtcgttgttgaagaagcaccggtacagccggtt
gccgaaaccacagcaccggttgaagaagccaacgtggaagcaccggccgccgctgagcca
gtggttgaagcgcctgtcgtagcaacgcctgaagtagaagcgccagtggttgtagcaact
ccggtcgttgaagcgccagtggttgctccaacaccggtagtcgaagcgccggttgccgct
gagccagctcctgctgcagctcatcacgcaacggcaccaatgactcgcgcaccagcgcca
acctacgtgcctgaagcgccgcgtcacagcaactgggttcgccccgcctttgatttcgac
ggtaaaggttctgccggtggtcacagcgcaacccataccgcgacctcaggtccaacccgc
ccgcagccggttgaataa
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