Kluyvera ascorbata: KATP_42880
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Entry
KATP_42880 CDS
T06881
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kas
Kluyvera ascorbata
Pathway
kas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KATP_42880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kas03021
]
KATP_42880 (rpoC)
03400 DNA repair and recombination proteins [BR:
kas03400
]
KATP_42880 (rpoC)
Enzymes [BR:
kas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KATP_42880 (rpoC)
Transcription machinery [BR:
kas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KATP_42880 (rpoC)
DNA repair and recombination proteins [BR:
kas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KATP_42880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
BCA41766
LinkDB
All DBs
Position
complement(4599712..4603968)
Genome browser
AA seq
1418 aa
AA seq
DB search
MDCANSDGSKSVKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTF
KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELAC
PTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDAL
EEFGDEFDAKMGAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQ
SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD
IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY
SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW
DILDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH
VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG
PKEAERIYRAGLASLHARVKVRITEYEKDENGEFVANTSLKDTTVGRAILWMIVPKGLPF
SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEK
KYEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR
EGKEEQQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV
LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGG
DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLNEQWCDLLEENSVDSVKVRSVVSCD
TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS
IQVKNKGSIKLSNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGE
QVAGGETVANWDPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA
GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESG
GTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEM
IPKWRQLNVFEGERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN
DKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFARDLLGI
TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR
IRRRAAGEVSAAPQVSAEEATASLAELLNAGLGGSDND
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
gtggattgtgctaactccgacgggagcaaatccgtgaaagatttattaaagtttctgaaa
gcgcagactaaaaccgaagagtttgatgcgatcaaaattgctctggcttcgccagacatg
atccgttcatggtctttcggtgaagttaaaaagccggaaaccattaactaccgtacgttc
aaacctgagcgtgacggccttttctgcgcccgtatctttgggccagtaaaagactacgag
tgcctgtgcggtaagtacaagcgcctgaaacaccgcggtgtgatctgtgagaagtgcggc
gttgaagtgacccagaccaaagtgcgtcgtgagcgcatgggccacatcgagctggcatgt
ccaactgcccacatctggttcctgaaatcgctgccgtcccgtatcggtctgctgctcgat
atgccactgcgtgatatcgaacgcgtactgtacttcgaatcttatgttgttatcgaaggc
ggtatgaccaacctggaacgtcaacagatcctgactgaagagcagtatctggacgcgctg
gaagagttcggtgacgaattcgacgcgaagatgggtgcggaagctatccaggccctgctg
aagagcatggatctggagcaagagtgtgaaactctgcgtgaagagctgaacgaaaccaac
tccgaaaccaagcgtaaaaagctgaccaagcgtatcaagctgctggaagcgttcgtacag
tctggtaacaagccagagtggatgatcctgaccgttctgccggttctgccgccagatctg
cgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtat
cgtcgcgtcattaaccgtaacaaccgtctgaagcgtctgctggatctggctgcgccagat
atcatcgttcgcaacgaaaaacgtatgctgcaggaagcggtcgacgccctgctggataac
ggtcgtcgcggtcgtgcgatcaccggttctaacaaacgtcctctgaaatctttggctgat
atgatcaaaggtaaacagggtcgtttccgtcagaacctgctcggtaagcgtgttgactac
tccggtcgttctgtaatcaccgtaggtccatacctgcgtctgcatcagtgcggtctgcct
aagaaaatggcactggagctgttcaaaccattcatctacggcaaactggaactgcgtggc
ctggccaccaccatcaaagccgctaagaaaatggttgagcgcgaagaagctgtcgtttgg
gatatcctggacgaagttatccgcgaacacccggtcatgctgaaccgtgcaccaacactg
caccgtctgggcatccaggcgtttgagccagtactgatcgaaggtaaagctattcagctg
cacccgctggtttgtgcggcatataacgccgacttcgatggtgaccagatggctgttcac
gtaccgctgacgctggaagcccagctggaagcgcgtgcgctgatgatgtctaccaacaac
atcctgtccccagcgaacggcgagccaatcatcgttccttctcaggacgttgtattgggt
ctgtactacatgacccgtgactgtgttaacgccaaaggcgaaggcatggtgctgactggc
cctaaagaagctgagcgtatctatcgcgcaggtctggcctctctgcatgcgcgcgttaaa
gtgcgtatcaccgaatacgaaaaagatgaaaacggcgaattcgttgcgaacaccagcctg
aaagacacgaccgttggccgtgctattctgtggatgatcgtaccgaaaggtctgcctttc
tccatcgtcaaccaggcgctgggcaagaaagctatctccaaaatgctgaacacctgttac
cgcattctgggcctgaagccgaccgtaatcttcgctgaccagaccatgtacaccggcttt
gcctatgcagcgcgctcaggcgcctctgttggtatcgacgacatggttatcccagagaag
aaatacgaaatcatcagcgaagcggaagctgaagttgctgagatccaggagcagttccag
tctggtctggtaaccgctggtgaacgctacaacaaagttatcgatatctgggctgcggcg
aacgatcgtgtatccaaagcgatgatggataacctgcaaactgaaaccgtcattaaccgt
gaaggtaaagaagagcagcaggtttccttcaacagcatctacatgatggccgactccggt
gcgcgtggttctgcggcacagattcgtcagctggctggtatgcgtggtctgatggctaag
ccagatggctccatcatcgaaacgccaatcaccgcgaacttccgtgaaggtctgaacgta
ctccagtacttcatctccactcacggtgctcgtaaaggtctggcggataccgcactgaaa
acagcgaactccggttacctgactcgtcgtctggttgacgtggcacaggacctggtcgtt
actgaagacgactgtggcaccctggaaggtatcaccatgaccccggttatcgagggtggt
gacgttaaagagccactgcgcgatcgcgtactgggtcgtgtgactgctgaagacgttctg
aagccgggcaccgcggacattctggttccacgtaacacgctgctgaacgagcagtggtgt
gatctgttggaagagaactccgttgactccgtcaaagtgcgttccgttgtatcctgtgac
accgactttggtgtatgtgcgcactgctacggtcgtgacctggcgcgtggccacatcatc
aacaaaggtgaggctatcggcgttatcgctgcacagtccatcggtgaacctggtacacag
ctgacgatgcgtacgttccacatcggtggtgcggcatctcgtgcggctgctgaatccagc
atccaggttaagaacaaaggtagcatcaagctcagcaacgcgaagtcggttgtgaactcc
agcggtaaactggttatcacttcccgtaacaccgagctgaaactgatcgacgaattcggt
cgtaccaaagaaagctataaagtgccttacggctccgttatggctaaaggtgatggcgag
caggttgccggcggtgaaaccgtagcaaactgggatccacacaccatgccggttatcacc
gaagtaagtggtttcatccgcttcactgacatgatcgacggccagaccattactcgtcaa
actgacgaactgaccggtctgtcttctctggtcgttctggattctgctgaacgtaccgcg
ggtggtaaagacctgcgtccagcactgaaaattgttgatgctcagggcaacgacgttctg
atcccaggcaccgatatgcctgctcagtacttcctgccgggtaaagcgattgttcagttg
gaagatggcgttcagatcagttctggtgacaccctggcccgtgttcctcaggaatccggc
ggtaccaaggacatcaccggtggtctgccacgcgttgcggatctgttcgaagcacgtcgt
ccgaaagagccggcaatcctggctgaaatcagcggcatcatttccttcggtaaagaaacc
aaagggaaacgtcgtctggttatcaccccggtagacggtagcgatccgtacgaagagatg
attccaaaatggcgtcagctcaacgtgttcgaaggtgaacgtgtagaacgtggtgacgtg
gtttccgatggtccagaagcgccgcacgacatcctgcgtctgcgtggtgtgcatgctgta
actcgttacattgttaacgaagttcaggacgtataccgtctgcagggcgttaagattaac
gataaacacatcgaagttatcgttcgtcagatgctgcgtaaagccaccatcgaaagcgct
ggtagctccgacttcctggaaggcgaacaggttgaatactcccgcgttaagattgctaac
cgcgatctggaagcgaacggcaaagtgggcgcaaccttcgctcgcgatctgctgggtatc
accaaagcgtctctggcaaccgagtcgttcatctctgcagcatcgttccaggagaccacg
cgtgtcctgaccgaagcagccgttgcgggcaaacgcgacgaactgcgcggcctgaaagag
aacgttatcgtgggtcgtctgatcccggctggtaccggttatgcgtaccaccaggatcgt
atccgtcgccgtgcggcgggcgaagtttctgcagcacctcaggtgagtgcagaagaagcg
accgcgagcctggcagaactgctgaacgcaggtctgggtggttctgataacgactaa
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