Kluyvera ascorbata: KATP_42890
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Entry
KATP_42890 CDS
T06881
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kas
Kluyvera ascorbata
Pathway
kas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KATP_42890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kas03021
]
KATP_42890 (rpoB)
03400 DNA repair and recombination proteins [BR:
kas03400
]
KATP_42890 (rpoB)
Enzymes [BR:
kas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KATP_42890 (rpoB)
Transcription machinery [BR:
kas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KATP_42890 (rpoB)
DNA repair and recombination proteins [BR:
kas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KATP_42890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BCA41767
LinkDB
All DBs
Position
complement(4604012..4608040)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVASKD
YVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGSDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKEAEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtcccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaaggtcagtatggtctggaagctgctttccgttccgtattccctatcaaa
agctacagcggtaactccgagctgcaatacgtcagctaccgtctgggcgagcctgtcttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccaggcgtcttctttgactccgat
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtatcgaccgt
cgccgtaaactgcctgcgaccattattctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaagttgtcttcgaaattcgtgacaacaagctgcagatggaa
ctgattccagaacgtctgcgtggcgaaaccgcgtccttcgacatcgaagcgaacggtaaa
gtgtacgttgaaaaaggccgccgtattactgcgcgccacattcgccagctggaaaaagac
gatatcaaacatatcgaagttccggttgagtacatcgctggcaaagtcgcttctaaagac
tacgttgacgaatctactggcgagctgatctgcccagccaacatggagctgagcctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcactaacgat
ctggaccacggtgcatacatttctgaaactgtacgcgtcgacccaactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccaactcgtgaagct
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctatgacctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggtgaaatggcg
gaaaaccaattccgcgttggcctggtacgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttctgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccgggcggtctgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggcttccttgagactccgtaccgtaaagtgaccgacggtgttgtaacc
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagacctggtaacttgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgcagttgctaagcgt
ggcggtaccgttcagtacgtcgacgcatcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggcgaagcgggtatcgacatctacaacctgactaaatacacccgttctaac
cagaacacctgtattaaccagatgccttgcgtgtctctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtccaccgacctgggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaacggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgcagaagtcaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagactcttccctgcgcgta
ccaaacagcgtttccggtactgttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
tctgaagaactgcagatcctcgaagctggcctgttcagccgtatctacgctgtgctggtt
gccggtggtgtcgaagctgagaagctggacaaactgcctcgcgatcgctggctggaactc
ggtctgaccgacgaagagaaacagaatcagctggaacagcttgctgaacagtacgacgag
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcacccaaggcgac
gatctggcaccgggtgtgctgaagattgttaaggtatacctggccgttaaacgccgtatc
cagcctggtgacaaaatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgagttcatccagcgtgcttacgatctgggctctgatgttcgtcagaaagttgac
ctgaacaccttcaccgatgatgaagtgctgcgtctggctgaaaacctgaagaaaggtatg
ccaatcgcaacgccagtattcgacggtgcaaaagaagcggaaattaaagaactgctgcaa
ctgggcggtctgccatcttctggtcagattaccctgttcgacggccgtaccggtgaacag
ttcgagcgtcaggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtactaagatgtataagaacatcgtagatggcaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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