Kozakia baliensis: A0U89_07740
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Entry
A0U89_07740 CDS
T04547
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kba
Kozakia baliensis
Pathway
kba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0U89_07740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kba03400
]
A0U89_07740
Enzymes [BR:
kba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0U89_07740
DNA repair and recombination proteins [BR:
kba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0U89_07740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOX17056
UniProt:
A0A1D8UTU4
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All DBs
Position
complement(1657871..1661323)
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AA seq
1150 aa
AA seq
DB search
MTDFSSWPTVWGVPEAFTAFLLRRRLGEHAGPLLHVARDDAALATLADMIGYVEPDVEVL
RFPAWDCLPYDRVSPNQAITAERAGTLTRLLEPTKARRIILTTVNGLVQRVPPRKAYQGQ
SLSIRAGESLDQAMLIELLIGSGYTRTDTVMEAGEFATRGGIFDLFPAAEAEPVRLDLFG
DEVENIRRFDVGTQRSTGTLDRFDLRPVSEYALGPESISRFRSAWRDLFGPSAASDTIYE
NVSDGRRYPGLEHYVPLFHDGMENLIDYIPDVSISFDHQIPDILTARLEMIADHYEARKA
PAREGEMIYRALPSHLLYLNRDGWDAMLSRVPCALLSPFAKPDLTPGLDAGGRPGPLFAR
AKDGSREGVFEAFAEQVTNWAKTGRRSYVTAWTRGSRERIATLLHEHGIAVETHDSWATA
AGMAAGPVGLVTLGLERGFVSDRFAFVSEQDLLGERISRPPRRKRRAEQFITEASEIAEG
DLVVHADYGIGRYEGLETVSDGVAPHDCLRLLYDGEQKLFLPVENIELLSRFGSDQGHVQ
LDRLGGQAWQARKAKMKSRIRDMAGELIRTAAGRALKDAPTLAPAEGLWDEFCARFPFVE
TDDQSRAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGVQVAVVVPTTLL
ARQHFRSFSARFEGFPVRVAQLSRLVTAKEAAEVRRGLESGQVDIIVGTHALLAKNVSFN
DLGLLIIDEEQHFGVGHKERLKSLREDVHVLTLSATPLPRTLQLSLSGVREMSLIATPPT
DRLAVRTFITPFDSVMIREAIQRERFRGGQIFCVVPRIEDMDRMAERLRDIIPDAKTVQA
HGRLTPGELERVMTEFSDGKYDVLLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRG
RVGRGKQRGYAYLTWPQTHRLSPASEKRLEIMQTLDSLGAGFTLASHDLDLRGAGNLLGD
EQSGHIKEVGIELYQQMLEDAVADLRAEKGRKRAEDENWTPNIVLGLPVLIPDSYVRDLP
VRLGLYRRIAGLNGEAEVDAMRAELVDRFGSLPPEVENLLDVVIIKRLCRAADVERLEAG
PKGMVLQFRNKKFRNPMGLLSWVERHREQGVKLRPDQKLAVVREMTNAQRIVMARKVMGA
LKKLAEKVEA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttttcgtcttggcccaccgtttggggtgtgccggaagctttcaccgcgttt
ttgctgcgtcgccgcctgggcgaacatgcgggaccgttgttgcatgtcgcgcgtgacgac
gcggctttggcgacgttggcggatatgattgggtatgtcgagccggatgtggaagttctg
cgctttcccgcctgggattgtctgccttacgaccgcgtttctcccaatcaggcgattacg
gcggagcgcgcgggtacgttgacgcgtttgctcgaaccgacgaaggcgcgtcggattatt
ctgacgaccgtcaatgggttggtgcagcgggtgccgcctcgcaaggcgtatcaggggcaa
tccttgagcattcgtgcgggcgagagcctggaccaggcgatgttgatcgagttgctgatc
ggcagcggttatacgcgcaccgataccgtgatggaggcaggggagttcgccacgcgcggc
ggtattttcgatctgttcccggcagcggaggccgaaccggtccgactcgacctgttcggc
gatgaggtggagaatatccgccgtttcgatgtgggaacgcagcgctccaccggaacgctg
gatcgcttcgacctgcggcccgtttccgaatatgcgttggggccggaaagcatcagccgt
ttccgcagcgcatggcgcgatctgttcggtccatcggcggcatccgataccatttacgag
aatgtttcggacgggcggcgttatccgggtctcgaacattatgtgccgttgttccatgac
ggcatggaaaatctgatcgactatattccagatgtgtcgatcagtttcgatcatcagata
cctgatattctgaccgcgcggcttgagatgatcgccgatcattacgaggcgcgcaaagcg
cccgcgcgcgaaggcgagatgatctatcgggcgttaccgtctcatctgctttatctaaac
cgagatggctgggacgccatgctgtcgcgcgtgccgtgcgcgttgcttagcccgttcgca
aaacccgacctaacgccgggtttggatgcgggcggacgaccggggccgcttttcgcgcgg
gccaaggatggcagccgcgagggtgtgttcgaagcttttgccgagcaagtgacgaattgg
gcgaaaacgggccgccggagttacgtgacggcctggacgcgcggttcgcgcgagcgcatc
gctacgttgctgcatgagcatggcattgccgtggagacgcacgatagctgggcgacggca
gcgggcatggcggcgggaccggttgggctggtaacgctggggcttgagcgtggcttcgtt
tcggaccgcttcgctttcgtttcggagcaggatttgctgggcgagcgcatttcgcgcccc
ccgcgccgtaaacgccgcgccgagcagttcattaccgaagcctcggaaatcgctgaaggc
gatctggtggtgcatgccgattatggcatcggacgttatgaagggctggagacagttagc
gacggcgtggctccgcatgattgtttacgcctgctttacgatggcgagcagaagctgttt
ctgccggtcgagaatatcgagcttctaagtcgtttcggttccgatcaggggcatgttcag
cttgacaggctgggcgggcaagcgtggcaggctcgcaaggccaaaatgaaatcccgtatc
cgcgatatggccggagaactgatccgcaccgcggcaggacgcgccttgaaggacgcgccg
acgctggcaccagcggaagggctgtgggacgagttttgcgcgcgtttcccgttcgtggag
acggacgatcaatcgcgcgccattgccgatgtattggaagacatgagttcgggccgcccg
atggaccggctggtttgcggcgatgtcggatttggcaagacggaggttgcgttgcgtgcg
gctttcgtagcggcgctttcgggcgtgcaggtggcggttgtagtgccgacgaccttgctg
gcgcggcagcatttccgcagtttctcggctcgattcgaaggtttcccggtgcgtgtggcg
cagctttcccgtctggtgacggcgaaagaagcggcggaggtgcggcgcggattggaatcg
gggcaggtcgatatcatcgtcggcacgcacgcgctcttggcgaagaacgtctcgttcaac
gatttaggtctgctgatcatcgatgaggagcagcatttcggggtcgggcataaggagcgt
ttgaaatcgctgcgtgaagacgtgcatgtgctgacgctttcagcgacgccattgccgcgc
accttgcagctttcgctttccggcgtgcgggagatgagcctgatcgcaacaccgccgacg
gatcgtctggcggtgcgcacgttcattacgccattcgacagcgtgatgattcgtgaagct
atccagcgcgagcgttttcgtggcgggcaaattttctgcgtggtaccgcggatcgaggat
atggatcgcatggcggagcgcctgcgtgacatcattcctgacgccaagacggttcaagcg
catgggcggctgacacccggcgaactcgaacgcgttatgacggagttttcggacgggaaa
tacgacgttctgctttcgaccaatattgtggaaagcggattggacatgccggcggtcaat
acgctcatcatccatcgggcggatatgttcgggctgggccagctttaccagctgcgcggg
cgtgtggggcgcggtaagcagcgaggttacgcttatctgacttggccgcagacgcaccgg
ctttcccccgcttcggaaaagcggcttgagatcatgcaaacgctggattcgttgggtgcg
ggcttcacgctggcttcgcacgatctggatttgcgcggcgcgggcaatttgctgggcgac
gagcaatccggccatatcaaggaagttggcatcgaactttaccagcagatgctggaagat
gcggtggcggatttacgcgccgaaaagggacgcaaacgagcggaggacgagaactggaca
cccaatatcgttctgggcctgcctgtgttgattcccgatagttacgtgagggatctgccg
gtgcggctggggctgtatcgccgtatcgccgggctgaatggcgaggcagaggtggacgcc
atgcgcgcggaactggtggaccggtttggaagccttccgccggaggtggaaaatcttctg
gatgtcgtcatcatcaagcggttgtgccgcgctgcggatgtcgagcgtttggaggctggt
ccgaaaggcatggttttgcagttccgcaacaagaaattccgcaatccgatgggactgctg
agttgggtggagcggcatcgcgagcagggggtgaaactacgccccgatcagaaactggct
gtggtgcgcgagatgaccaatgcgcagcggatcgtcatggcgcgcaaggtgatgggcgcg
ttgaagaagctggcggaaaaggtcgaggcttga
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