Kozakia baliensis: A0U89_09405
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Entry
A0U89_09405 CDS
T04547
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kba
Kozakia baliensis
Pathway
kba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0U89_09405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kba03019
]
A0U89_09405
03009 Ribosome biogenesis [BR:
kba03009
]
A0U89_09405
Enzymes [BR:
kba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A0U89_09405
Messenger RNA biogenesis [BR:
kba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A0U89_09405
Ribosome biogenesis [BR:
kba03009
]
Prokaryotic type
rRNA processing factors
A0U89_09405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOX17315
UniProt:
A0A1D8UUJ8
LinkDB
All DBs
Position
2020347..2023193
Genome browser
AA seq
948 aa
AA seq
DB search
MHKRMLIDTTHAEETRVVVMDGDRLEDYDVETSNKKQLKGNIYLAKVIRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYFQIPVADREKLIALQDEEARAEEARRDSEDETSVAEDGEEDE
NGASEENSRPEIVGGEHDTGDESAAARRTARFLRNYKIQEVIRRRQVLLVQVVKEERGNK
GAALTTYVSLAGRYCVLMPNALRGGGVSRKITSDSDRKRLRDIISALDLPRGMAMIVRTA
GAQRPGPEITRDCEYLLQLWDDIRSHTLSSVAPTLVYEEASLIKRAIRDLFSKDIEEIVI
DGEPAWKNAREFMRLLMPHNVNKVKLWRDHAQSLFARYQVEGHLDAIFSPTAQLRSGGYI
VINQTEALVAIDVNSGRSTGQRNIEDTAVRTNLEAAEEVARQLRLRDLAGLIVIDFIDME
SRKHNHMVEKRLKEALRSDRARIQIGQISHFGLLEMSRQRLRPSIAEAVLTPCPYCQGTG
YIRGTESAALHILRAVDDEGAQQRAAEIEVHVAPGVALYILNNKRGWLTDIEQRHRMQVF
FQADEGMTPSDLRIERIRPQTAPAPEPQTTVPTNVMAGPGPAVAVFEAEREEPQASPSSN
EYSEEGQEDQGRRRRRRRRRGGRRNDQRFEDDNGTATPAEYRDHSAVEETEFDNAAAAPA
ARAPTHEQAEEPVQTQEAAMIMPGRRRTRTRRAIREDRPSRDRQDHDNQREYQYREERQP
QNQRPVWVGPTPADPFGGGSFDIFDVIEQAEFEQVSAPHHEPTSAPVTPEKVEVHVEPVP
QVESSAPETQANETPVVEVPVEEAPVPQAEATEAEVTETPAAATPKPRRRGRPRKTAAAK
AEVTEPAPTAPEPADAQPVAEVEDTASETKAAPRRRGRPRKTPAAENVAEVSEKAATTAP
KPKSRARSKAKVKEEAPAETDNAEQPLVQPIDVDKTPPAKRRTGWWKR
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagcgtatgttgatcgacaccacacacgcggaagaaacccgcgttgtggtaatg
gatggtgatcggctggaagattacgacgtcgagacgtcgaacaagaagcagctcaaaggc
aatatctaccttgccaaagtcattcgcgtcgaacccagccttcaggcggccttcgtcgat
tacggcgggaaccggcatggatttttggctttcagcgaaatccaccctgattacttccag
atcccggtcgccgatcgcgaaaagctgatcgcacttcaggacgaggaagcaagggccgaa
gaagcgcgccgcgatagcgaagatgaaacttccgtcgctgaggatggcgaggaagacgaa
aacggcgcctccgaagaaaattctcgccccgaaatcgtcggcggcgaacatgacacaggc
gatgaaagcgccgcggctcgccgcacggcgcgcttcctgcgcaactataaaatccaggaa
gtcatccgccgccgtcaggttctgctggtgcaggtcgttaaggaagagcgcggtaataaa
ggcgcggcactgacgacctatgtctcgctggcgggccgttactgcgttctgatgcccaac
gctctgcggggtggtggcgtttctcgcaagatcacttccgattccgaccgcaagcgcctg
cgcgacattatttctgcgctcgacctgccgcgcggcatggcgatgatcgtgcgcacggcg
ggcgcgcaacgcccaggcccggaaatcacgcgcgattgcgaatatctcctgcaattatgg
gatgatatccgcagccatacgctttcttccgtcgctcccacgttggtttacgaggaagcg
agcttgatcaagcgcgcgatccgcgatctgttcagcaaagatatcgaagagatcgtgatc
gacggcgaaccggcgtggaaaaatgcacgcgagttcatgcgtctgctgatgccgcataac
gtcaacaaggtgaagctgtggcgtgaccatgcgcagagcctgttcgcacgctatcaggtc
gaaggccatctggacgcgatcttctcgccgactgcgcaactgagatctggcggttatatc
gtcatcaatcagacggaagcgctggtggcgatcgacgtgaactcgggtcgttccaccggc
cagcgcaacatcgaagatacggcggtccgcaccaatctcgaagcggcggaagaagtcgcc
cgtcagttgcgtctgcgcgatctggccgggttgatcgtgatcgatttcatcgacatggag
agccgcaagcacaatcatatggtcgagaagcgcttgaaagaagcgctgcgctccgaccgt
gcacgcatccagatcgggcagatatctcatttcggcctgttggaaatgtcgcgccagcgg
ctgcgcccctccattgccgaagcggttctaacaccctgcccctattgccagggcaccggt
tatattcgcggcacggaaagcgcggcgctgcatattctgcgcgcggtcgatgacgaaggc
gcacaacagcgagctgctgaaatcgaagtgcatgtcgcgccgggcgtggcgttgtatatc
ctcaacaacaagcgcggctggctgacggatatcgagcagcgccatcgcatgcaggtcttc
ttccaggccgatgaaggcatgacgccttccgatctgcgtatcgaacgtattcgcccgcag
acggcccccgcgccggaaccgcaaaccacggttccgacgaacgtcatggcggggcctggt
cctgctgttgccgtgttcgaagcggaacgcgaggagccgcaagcttcgccttcttccaac
gaatattccgaagaaggccaggaagatcagggccgccgtcgccgccgccgtcgccgtcgt
ggaggtcgccggaacgaccagcgcttcgaggacgataacggcacggcgacgcccgccgaa
tatcgcgatcacagcgcggtagaagagacggagttcgacaacgcggcagcggccccggcg
gcgcgcgcacctacgcacgaacaggccgaagaacctgttcaaacgcaggaagcggcaatg
atcatgccgggtcgtcgacgcacacgcacgcggcgcgccatccgggaagatcgtccgtca
cgcgatcgtcaagaccatgacaatcaacgcgaatatcaatatcgcgaagagcgtcagcct
cagaaccagcgccccgtttgggtcggccccaccccggcggacccgtttggcggcggcagc
ttcgacattttcgatgtgatcgagcaggctgagttcgagcaggtttctgcgccgcatcac
gaaccgacttcggcaccggtcacgccggagaaggtcgaggttcatgtcgaacctgtgccg
caggttgagtcttctgctcccgaaactcaggcgaacgaaacgccggtcgttgaggtgccg
gttgaggaagcgcctgtcccgcaagctgaagcgacggaagctgaagtaacggaaacgcct
gcggcagcgacgccaaaaccccgccggcgcggtcgtccgcgtaagacggccgcggctaag
gccgaggtgacggaacccgcgccgaccgcgccggaacccgccgatgcgcagcctgttgct
gaggtggaagatacggcctcggagacaaaagcggcaccgcgccgccgtggtcgcccgcgc
aaaacgccggcagcggaaaatgttgcggaagtttccgaaaaagcggcaaccaccgctccg
aaaccgaagagccgcgcgcgcagcaaggccaaggtgaaggaagaagctcccgccgagacg
gataacgccgagcagccgctcgtgcagccgatcgacgtggataaaacgcctcccgccaaa
cgccgcacaggctggtggaagcgttaa
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