Ktedonobacteria bacterium brp13: ccbrp13_04790
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Entry
ccbrp13_04790 CDS
T09592
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kbb
Ktedonobacteria bacterium brp13
Pathway
kbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ccbrp13_04790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbb03019
]
ccbrp13_04790
03009 Ribosome biogenesis [BR:
kbb03009
]
ccbrp13_04790
Enzymes [BR:
kbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ccbrp13_04790
Messenger RNA biogenesis [BR:
kbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ccbrp13_04790
Ribosome biogenesis [BR:
kbb03009
]
Prokaryotic type
rRNA helicases
ccbrp13_04790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BCL78014
LinkDB
All DBs
Position
complement(575886..577565)
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AA seq
559 aa
AA seq
DB search
MPSFNDFTLSPATRAVLADMGISEPSPIQAEAIPALLAGRDLMGQSATGSGKTLAYSIPL
VERLARDRRAVQALVLVPTRELAVQVNTVLSQLAKAKRLTTALLVGGRPYGSQMSALRYG
SQIVVGTPGRVKDHLERGTLSLNNLRICVLDEADQMLDSGFGPEIEKILSTTPENRQMAL
FSATMPEWIVKLQENFLKDPVKVEIIPVAGAESTIEQIAYQVPHDQKMAALCTLLLSSEG
ESSLIFGKTKYGVEKLGKQLSKLGYAVGTLHSNKSQRAREEVLTAFRHGRVQTLLATNVA
ARGLDIQDIYQVINYELPESSELFTHRIGRTGRMGKQGKAITLLVPSDIGKFKRMSRTLG
QPVSLQKLTINADAMIERPLAEPEIAPMPEPSFEQRGDRQFGPAGRPGRGRGREMPRQDR
GRFTRAKSDLYAAPDLQRGQADRSERFERSERLNRSERPDRFERAERVESTRAKPERVPV
WQDEEAQMPERKRPYAGSGKTRDDRRGPVNGGGRSSGRYNAPASAAVTLESGERPGFKKT
TRVPKGRRAIALSRPYVGR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgccctcatttaatgactttactttgtcacctgcaactcgtgctgttctggcggatatg
ggtatttctgagccgtcacccattcaggctgaggcgattcctgccttacttgctggtcga
gacctgatggggcaatctgcaactggctccggtaaaactcttgcctatagtattccgttg
gtagagcgcctggctcgcgatagacgtgctgtgcaggcactggtacttgtaccaacacgc
gaactggctgttcaggttaacactgttttgagtcaattggcaaaagcgaagcggctgaca
acggcgctgctggtgggtggacgcccttatggtagtcagatgtctgctctgcgttatggt
tctcagattgtcgttggtactcccggtcgtgttaaagatcatctggagcgcgggacgtta
tctctgaacaatttacgcatctgtgtgcttgatgaagctgaccagatgctggatagtggc
tttggaccagagatcgagaagatcctgtcaaccactcccgaaaatcgacagatggcactc
ttctctgcaactatgccggaatggattgttaaacttcaagagaatttcctcaaagatccc
gttaaagtcgagatcattcctgtcgctggtgctgagagcactatcgaacagatcgcttac
caggtccctcatgatcagaagatggctgcactttgcactctcttgctctcctctgaaggc
gagagtagcctgatctttggtaagaccaaatatggtgttgagaagcttggcaaacagctg
agcaagcttggctatgcggtaggcactttgcatagtaataagagccagcgcgctcgtgaa
gaagtcttgaccgccttccgtcatggacgcgtgcagaccctgctggcgacaaacgttgcc
gcacgtggtctggatattcaggacatctatcaggttatcaactatgagttgcctgagtcg
agcgagctctttacccatcgtattggccgtaccggtcgtatgggcaaacagggcaaagcc
attactttgctggtaccatccgatatcggcaagttcaaacgtatgtcgcgcactctggga
caacctgtctccttacagaagcttactattaacgcagatgcgatgattgagcgtccattg
gctgagccagagattgcgccgatgccagagccctctttcgagcagcgcggagatcgccag
tttggacctgcgggccgaccaggacgtggtcgcggtcgtgagatgcctcgtcaggatcgt
ggcagatttactcgcgcaaagagtgatctttatgcagcccctgacttgcagcgcggccag
gctgatcgctcagagcgcttcgagcgcagtgagcgtctgaatcgcagcgagcgtccggac
cgcttcgagcgtgccgagcgcgttgaaagtacgagagctaaaccggaacgtgtacctgtc
tggcaggatgaagaggctcagatgccagagcgcaaacgtccatacgctggctctggtaag
acacgcgatgatcgtcgcggaccagtcaatggtggtggtagaagctcaggtcgctataat
gcccctgcttccgctgctgtaaccctggagtcgggcgagcgccctggcttcaaaaagacg
accagggtgccaaaaggacgacgagcgatcgctctttcaagaccctatgttggtcgctag
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