Ktedonobacteria bacterium brp13: ccbrp13_06530
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Entry
ccbrp13_06530 CDS
T09592
Symbol
rho_1
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kbb
Ktedonobacteria bacterium brp13
Pathway
kbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ccbrp13_06530 (rho_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbb03021
]
ccbrp13_06530 (rho_1)
03019 Messenger RNA biogenesis [BR:
kbb03019
]
ccbrp13_06530 (rho_1)
Transcription machinery [BR:
kbb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ccbrp13_06530 (rho_1)
Messenger RNA biogenesis [BR:
kbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ccbrp13_06530 (rho_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
BCL78188
LinkDB
All DBs
Position
complement(795588..796877)
Genome browser
AA seq
429 aa
AA seq
DB search
MTSTEFMPRSNQNFYNQPVQPDQTHQSGQTGHLNHPHYAAHTSHTDEFQVQDDQQETFKG
GGILEIVADGFGVLRRQHFMPDAQDIYVSASQIRRFGLRLGDFVEGQARPPKDREQFAGL
LRVESVNGLDPEVARRRPRFDALTPIFPYEQFDLETANSRDLSGRVINLVSPLGRGQRAL
IVAPPKAGKTVLLTSIANAIAQKYPDVHIMIALIGERPEEVTDLQRVIKAEVISSTFDEP
PYQHTRLAEMILERAKRLVEGGQDVVILMDSLTRLSRAYNLIVEPSGRSLSGGLDPNALT
LPKRFFGAARKIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMELVLNRKLAERRIF
PAVDITLSGTRREEMLYDKPTYRAAITMRRMFEQLSAQRGIEAVEALYQQMAKARNNKEF
LATLGRQID
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaactgaattcatgcctcgaagcaaccaaaatttttataatcaacctgttcag
cctgaccaaacgcatcaatccggacagactggtcatttgaatcatcctcattatgctgcg
catacttctcatactgatgaatttcaggtgcaggacgatcagcaagaaacgtttaaaggt
gggggtattctcgaaatagtggcagatggctttggtgtcttgcgacgacagcattttatg
ccagacgctcaggatatctatgtctctgcttctcaaattcgtcgttttggactccgtctg
ggtgattttgttgaaggccaggctcgtcctccgaaagatcgtgagcagttcgcaggtcta
cttcgtgtcgagtcggtaaatggtctggatccagaggtcgcgcgtcggcgaccgcgcttc
gatgctctgacccctatattcccctacgaacaatttgacctggagaccgccaatagtcgt
gatctctctggtcgtgtgattaaccttgtctctcctctgggtcgcgggcagcgtgcttta
attgttgctccacctaaagctggtaagactgttctcctcaccagtatcgccaacgctatc
gctcagaaatatcctgatgtgcatatcatgatcgctctgattggggaacgccctgaagag
gtgaccgatcttcagcgtgtgatcaaggcagaggtgatcagctcgacgtttgatgagcct
ccttatcagcatacccgtctggctgagatgatcctggagcgggcgaaacgccttgttgag
ggtggtcaggatgtggtcatcctgatggatagtctcacacgtctgagtcgtgcttataac
ctgatcgttgagcctagtggtcgtagcctctctggtggcctggatcccaatgctctcact
ttgcctaaacgcttctttggtgctgctcgtaagatcgaagagggtggtagtctgacgatt
atcgcgacggccctgatcgatactgggagccgcatggatgatgtcatttatgaagagttc
aaaggtaccggtaatatggagcttgtgctgaatcgtaaactggccgagcgccgtatcttc
cctgctgttgacattacgctctctggtacgcgccgtgaggagatgctttacgataagccg
acctaccgcgctgcgattacgatgcgtcgtatgtttgagcaactttcagcgcaacgtggt
atcgaggctgttgaagctctctatcagcagatggcgaaggcgcgcaataataaagagttt
ctggctacactaggtcggcagatagattag
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