Ktedonobacteria bacterium brp13: ccbrp13_69350
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Entry
ccbrp13_69350 CDS
T09592
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kbb
Ktedonobacteria bacterium brp13
Brite
KEGG Orthology (KO) [BR:
kbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kbb03016
]
ccbrp13_69350
Enzymes [BR:
kbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ccbrp13_69350
Transfer RNA biogenesis [BR:
kbb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ccbrp13_69350
Prokaryotic type
tRNA splicing ligases
ccbrp13_69350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
IF2_N
CysS_C
Motif
Other DBs
NCBI-ProteinID:
BCL84470
LinkDB
All DBs
Position
8521679..8523133
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AA seq
484 aa
AA seq
DB search
MSQKIPLERIDSTRWRIPQRFDPAMRVPGIVYGDDELIQLMLGDNALQQVVNVAALPGIV
GYVLGMPDIHWGYGFPVGGVAATDAETGVISPGGIGFDINCGVRLMATDLLYDQVKGRAD
NLADVLFKRLPSGVGGDGMRLLSRDEMRAVTLQGAAWAVEEGYGLPEDLDVTEERGCLAG
AMPEAVSQQAWTRGLKQLGSLGSGNHFCEIQVVDHIYDQRAADAMGIGRKGQVVASLHCG
SRGFGHQIAEDFTKLAESKQKEYGFELADRQLACLPLQSQEGQAYLGAMKCAANFAWANR
QLLMDGVRKSFAEIFGRKARVKDLPLVYDVCHNIAKMEEYEIDGQMKRVCVHRKGATRAF
PAGHPALPEKYREIGQPVFIPGDMGRYSFMLVGAPGSMEQSFGSCCHGAGRRMSRTAAKK
SVESHELLEQLAKKGITVRVHSKNLLAEEAPQAYKDAQQVVNVVHNAGLATLVVRLKPLI
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcagaagatacctttagagcgtatagactccacacgctggcgtatccctcagcgt
ttcgaccctgccatgcgtgttcctggcattgtttatggtgatgatgaattgatccaactt
atgcttggtgataatgcattacagcaggtcgtcaacgtagcagcgttaccaggaatagtc
ggttatgtattagggatgcctgatattcattggggctatggtttcccagttggtggtgtg
gctgccaccgatgccgagactggtgtgatttctcctgggggtatcggctttgatattaac
tgtggtgtgcggttaatggccacagatttactgtatgatcaggtgaaaggtcgtgctgat
aatctggccgatgtactctttaagcgtttaccgtcgggtgttggtggggatggtatgcgc
ctgctgagtcgcgatgagatgcgcgctgtcacgctgcaaggagcggcctgggcggtcgaa
gaggggtatggattacccgaagatctggatgtgacagaagagcgaggttgtctggcagga
gcgatgccagaggcggtaagccagcaggcctggacgcgaggtctcaaacaactgggcagt
ctgggttcgggcaatcatttttgtgagatccaggtagtcgatcatatctacgaccaacgc
gctgcagatgcgatgggtatcgggcgcaaggggcaggtggttgcttctctccattgtggt
tcgcgaggatttggacatcagatagccgaggattttacgaaattggcagaatcgaagcag
aaggaatacggttttgaattggctgatcgccagttggcgtgtttaccgttacaatcccag
gagggacaggcgtacctgggagctatgaagtgtgcagccaatttcgcctgggctaatcgc
caattgctgatggatggtgtccgaaagtcttttgctgagatctttggccgcaaagcacgt
gtcaaagatctgccactggtctatgacgtttgccataatattgccaagatggaagagtac
gagatcgatggccaaatgaagcgtgtctgtgtgcatcgtaaaggagccacacgcgcgttt
ccggcaggacatcctgcactgccagagaaatatcgtgagattggacaacctgtctttatc
ccaggtgatatgggacgctattcctttatgctggttggtgctccgggatccatggaacaa
agctttggttcgtgttgccatggtgcgggtcgccgcatgagccgtaccgctgctaagaag
tccgtggagagtcatgaactgctggagcagttagccaagaaaggcattaccgtacgtgtc
cacagcaaaaacctattggctgaagaggctccgcaagcatataaggatgcgcagcaagtg
gtcaatgtggtacataatgccggccttgcaactctagttgtacgactcaagccattaatt
gttgtcaaagggtag
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