Candidatus Kaistella beijingensis: J4771_03770
Help
Entry
J4771_03770 CDS
T07870
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kbe
Candidatus Kaistella beijingensis
Pathway
kbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4771_03770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbe03019
]
J4771_03770
Enzymes [BR:
kbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4771_03770
Messenger RNA biogenesis [BR:
kbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4771_03770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Cas3-like_C_2
UvrD-helicase
RecX_HTH2
HEM4
Flavi_DEAD
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UBB90484
LinkDB
All DBs
Position
809162..810412
Genome browser
AA seq
416 aa
AA seq
DB search
MNFTDLKLIEPIAKALQEEGYTQPTPIQQKAIPNILQGRDLLGTAQTGTGKTAAFAIPIL
QNLTEKNVRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQGAQEASLK
KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIVKLLPPKRQT
LFFSATFPDEIKNLADSILNNPVKVSVAPVSATADTIQQKVYFVEKDDKLDLLTHILQND
ISDSVLVFSRTKHGADKIARKLQKHKISAEAIHGNKSQNQRQNALTNFKSGKSRVLVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGKSISFVDGLDLINLKNTEKL
IGKKIPVEKDHPFHTDDLVVTKRDSNNKPFVPKPKPQSKENIGYKKPKNKGFFRKK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaccgacttaaaactaatcgaacctatcgcgaaagcgttacaggaggaaggt
tacacgcaaccaaccccaattcagcaaaaagcaattcccaacattttacaaggcagagat
ttgctcggaaccgcacaaaccggaaccggaaaaacggctgcatttgctattccaatttta
cagaatctgactgaaaagaatgtcagaaacaaccaaattaaagctttgattttaacgccg
acaagagaattggcgattcagattgaagaaagttttaacgcttacggaagacatttgaga
ttgagaaacctcgttgttttcggcggtgtgaaacaaggagcgcaagaagcgtctttgaaa
aaaggcgtcgatattttggtggctactccgggaagattgctcgactttatctcgcaggga
attatttctttgaaaaatttggaaattttcgttcttgatgaagccgacagaatgctcgac
atgggatttgttcacgatgtgaaaaggattgtgaagcttttaccaccaaaaagacagact
ttgtttttctcggcgacttttcccgatgaaattaaaaacttggcggattcgattctaaat
aatcctgtgaaagtttctgttgcgcccgtttctgcaactgcggacacgatccagcagaaa
gtatattttgtggaaaaagatgacaaactcgatttgttgacgcatattcttcagaacgat
atttcagattccgttctcgttttttcaaggacgaaacatggagcagataaaattgcgaga
aaactacaaaaacacaaaatttctgcggaagcaattcacggaaataagtctcaaaatcaa
agacaaaacgctttaaccaactttaaatcaggaaaatcgagagttttggttgccaccgat
atcgcagcaagaggaatcgatattgatgaactgaaatacgtggtaaacttcgaactttcc
gatgtttccgaaacttatgttcaccgcattggtaggacaggaagagccggtgcagaagga
aaatcgatttcttttgttgatggtttggatttgattaacctgaaaaatacggagaaactg
attggaaaaaaaattccggtagagaaagaccacccgtttcacaccgatgatttggtagtg
acaaagagagattcaaacaataaaccttttgttccaaagccgaaaccacaatcgaaggaa
aatattggctataagaaaccgaaaaacaaagggttttttaggaagaaataa
DBGET
integrated database retrieval system
