Candidatus Kaistella beijingensis: J4771_03805
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Entry
J4771_03805 CDS
T07870
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kbe
Candidatus Kaistella beijingensis
Pathway
kbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4771_03805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbe03019
]
J4771_03805
03009 Ribosome biogenesis [BR:
kbe03009
]
J4771_03805
Enzymes [BR:
kbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4771_03805
Messenger RNA biogenesis [BR:
kbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4771_03805
Ribosome biogenesis [BR:
kbe03009
]
Prokaryotic type
rRNA helicases
J4771_03805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UBB90491
LinkDB
All DBs
Position
complement(816200..817900)
Genome browser
AA seq
566 aa
AA seq
DB search
MNLFTETNLSPDLLKAIGELGFTSPTEIQKQTIPFISSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIKNYSKYMQNIKTTAVYGGSSITDQIRSLR
EKPQIIVGTPGRVIDLINRKALDFSEIHWLVLDEADEMLSMGFKDDLETILRETPETKQT
LLFSATMNKEVERISKNYLTNPHRISVGSINEVKKNIKHEYYVVGYRHKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSS
TKIDIQEKKIPTGDAIIKAQVGGVFEKLFTEHENVFDFDDELIPDLSAFSKEELVHQLLQ
LQLRDLALYYKDKNDLADQKFNTDEGRESRRDRGRDRDGRGRDRDRGDRREGGRGESRER
KPRRNSGDMTRFFFNLGKRDNLKKMDMLEILNKATSKSKKRPDIGDIEILEKFSFFEVEK
SFKDEVLRGLQTQKFKGKEMRAEVAN
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatctaagtcctgatctattgaaggcaattggcgaattg
ggctttacaagtcctacagaaatccaaaaacagactattccttttatctcttcagatatt
cgcgatctcatcgcacttgcgcagacaggaacaggcaaaacagcagcattttcgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaacttttggtgctgtgtcctaca
agagaactttgtttgcaaattaccaaagacattaaaaattactcgaaatacatgcaaaac
atcaaaaccactgcggtttatggtggaagcagtattaccgaccaaatccgctccttgaga
gagaaaccgcaaattattgtgggaactccgggacgtgtgatcgatttgattaacagaaaa
gccctcgatttttctgaaattcattggttggttttggatgaggcagacgaaatgctttcc
atgggtttcaaagatgatttggaaaccattttaagagaaacaccggaaacgaaacaaact
ttattgttctcagcaacgatgaataaagaggtggaaagaatttctaaaaattatttaacg
aatccgcacagaatttctgttggttccattaatgaagtgaagaaaaacatcaagcacgaa
tattacgtggttggttaccgtcacaaaaaggaggcgttgaaaagattaatcgacgcaaac
cctaatcaatactcgattattttttgtagaacaagaatggaaacacaagaagttgccgat
ttcttgatgcagaacggttatgcagcagatgcgcttcacggcgatttgtcacaagcccaa
agagatacggtgatgaagaagttccgtttgaaaaacatcgacattttggtggcgacagac
gttgccgcaagaggtttggatgtgaattctttgacgcacgtaatccattattcacttccg
gatgatcctgaagttttcgtccacagaagcggaagaacaggtagagcagggaaagatgga
atttcaatggcattgattaaacctgaagaatcaagaaaattaaagcagattaaatcttct
actaaaattgatattcaggaaaagaaaattcctacgggtgatgcgattataaaagctcaa
gttggaggtgtttttgaaaaattatttacagaacatgaaaacgttttcgattttgatgat
gagttaattccagatttatcggcattttctaaagaagaattggttcatcagttgcttcag
ttgcaattaagagatttggcgctttattacaaagacaaaaatgatttggcggaccaaaaa
ttcaacaccgacgaaggcagagaaagtagaagagatcgtggtagagatcgagacggaaga
ggaagagaccgcgacagaggcgacagaagagaaggcggaagaggcgaatctcgcgaaaga
aaacccagaagaaacagtggcgacatgacaagatttttcttcaacctaggaaaacgcgac
aatttgaagaaaatggatatgcttgaaattttgaacaaggcaacttccaaatcaaagaag
cgtcccgatattggtgacatcgaaattttagagaaattctcattctttgaagtagaaaaa
tcctttaaagacgaagttttgagaggtttgcagactcaaaaattcaaaggaaaagaaatg
agggcggaagtagcaaactaa
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