KEGG   Kwoniella bestiolae: 30204444
Entry
30204444          CDS       T10967                                 
Symbol
I302_101362
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
kbi  Kwoniella bestiolae
Pathway
kbi03008  Ribosome biogenesis in eukaryotes
kbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    30204444 (I302_101362)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    30204444 (I302_101362)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kbi03021]
    30204444 (I302_101362)
   03019 Messenger RNA biogenesis [BR:kbi03019]
    30204444 (I302_101362)
   03009 Ribosome biogenesis [BR:kbi03009]
    30204444 (I302_101362)
   03016 Transfer RNA biogenesis [BR:kbi03016]
    30204444 (I302_101362)
Transcription machinery [BR:kbi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     30204444 (I302_101362)
Messenger RNA biogenesis [BR:kbi03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     30204444 (I302_101362)
Ribosome biogenesis [BR:kbi03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    30204444 (I302_101362)
Transfer RNA biogenesis [BR:kbi03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    30204444 (I302_101362)
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC zf-CCHC_3
Other DBs
NCBI-GeneID: 30204444
NCBI-ProteinID: XP_065725351
UniProt: A0AAJ8M5C1
LinkDB
Position
1:complement(join(3603396..3603487,3603539..3603637,3603791..3604379,3604505..3604820,3604896..3605099,3605270..3606152,3606213..3606602,3606708..3607061,3607151..3607333,3607420..3607569,3607668..3607860))
AA seq 1150 aa
MCMFIVLQGVPALFRWLSKKYPKIVNRVVEDTPKKVRTSDGEIEEIPVRYEGPNPNGFEV
DNLYLDMNGIVHPCTHPEGKPAPETEAEMMVEIFKYTERVVNMTRPRKVLMMAIDGVAPR
AKMNQQRSRRFRAAQEAADKAEEKREAIKMFEAMGHIVSEETQNQKHWDTNAITPGTPFM
DLLSISLKYWVSHKLSTDPGWKNLKVILSDSSVPGEGEHKIMDWIRRQRSHPTWDANTSH
VIYGLDADLIMLSLATHEPHFRVLREDVFAQGSKGPQPCKNCGQSGHLTSNCIGEKKAKD
PNVVEVAKPVDPKPFIFLDVSCLREYLAVELNVPGVPFPFDHELAIDDWIFMIFFVGNDF
LPHLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKNEDEIFQK
RKEDEERQEHHTKRRRIDDHRRQNEAKGNGGGQHTRFDEPPKGTMQLNGQEYVAVQPAAT
ARGGPLHPSLPTRPQFDLVPKEEADKKQSEAVKKAMSNTASNSDIVKNRRAIRMANLNAA
EALKAELLGDDEPETVTVENTEDEEKEQLPLEEAREVLEEQGEDEGVDEEIVQPAIVSDE
DEGEAPIGDETIELDEGESPTRPNKRKRTKGDDEDEEENGDEEDDDSSSSSSDDDDDDDA
PPNPEADQPVPKKKLKVNPDGTVEGYEDDVKLWEPGYRERYYEKKFGVSLSDTEFIQQIT
KSYMEGLCWVLEYYYQGVPAWDWFYPYHYAPFAQDFKDIDKFKIEFEISEPFKPFAQLLG
VFPAASRIHLPEPLQQLMINEDSPILDFYPDDFEIDMNGKKMAWQGVALLPFIDQDRLLA
ALESKEKELTPDEKFRNRWGDNIMFVSNQQEYGLGEVCSEMYGLKFKDINVPVPLNPKQS
DGATGSILAVPNYIPYSTFESPIPEIDECPDLTNNNSISVRYYFPKQAHPHRSVILPRYT
PGPSRLNESDKDWVQRGGGGGGHRKGPRHSGGGDQRTGGPGMGRGGFHQTPQPRTSNGYP
TPPASGYGGYAPPPVNAYNPPPRTYGGYAPPPPQAAPYGGGGYGGYGGGAYSAPQGGYGG
YGGGSAYSAYNPPPPRPNPYAAPPPNPYGAPRPAYGAPPQGRGGYNPYGGGGGAYQPRNG
GGGGRGGRRY
NT seq 3453 nt   +upstreamnt  +downstreamnt
atgtgtatgtttatcgtgctacagggtgtcccagcattgttcagatggttgtccaagaaa
taccccaagatcgtcaatagggtggtggaagatacacccaagaaagtccgaacgtccgat
ggagagattgaagagattccagtgaggtatgagggtccgaaccctaatgggtttgaggtg
gataatctgtatctcgatatgaacggtattgtccacccatgtacgcacccagagggtaaa
cccgctcctgagactgaagcggagatgatggtggagattttcaagtatacagaaagagtc
gttaatatgactagacccaggaaagtattgatgatggctattgacggtgtcgcacctcga
gcaaagatgaatcaacagcgttcgagacgatttagagcagctcaagaggcggctgataaa
gccgaagaaaagagggaggctataaagatgtttgaagctatgggacatattgtctcggag
gagacgcagaatcagaaacattgggatacgaatgctatcactcctggaaccccattcatg
gacctcctatcaatctctctaaaatactgggtatcccacaaactatccaccgacccagga
tggaagaacctcaaagtcatcctatcagactcgagcgtaccgggagaaggtgaacataag
attatggactggatcagaagacagagatcacatcctacgtgggatgccaatacctctcat
gtgatttatgggctggatgcggatctgatcatgctttcgctggctactcacgaaccccac
tttagagtcttgagggaggatgtgtttgctcaggggagtaaggggcctcagccgtgtaag
aactgtgggcagagtgggcatcttacttcgaactgtattggcgagaagaaagcaaaagat
ccaaacgtagttgaagttgccaaacccgttgaccccaaaccatttatcttcctcgacgta
tcctgcttaagagaatacttggccgtcgaactcaacgtacccggcgttcccttcccgttc
gatcacgaactagcaatagatgattggatcttcatgattttctttgtcggaaacgatttc
ttacctcatttaccaagtttggaaattcgtgaaggagctattgacgtgttactcaagatc
tggagagcggaactaccaagaatgggagggtacttgacgaatcatggaaaggtcaatttg
gatcgggcgcaggtgattttggaggggttggcgaagaatgaagatgagattttccagaag
aggaaggaggatgaagaacgacaggaacaccatacaaagagaagacggatagatgatcat
cgtcgtcagaatgaggctaaggggaatggcggaggtcaacatacgcgattcgatgaacca
cccaagggcacgatgcagctcaacggacaggaatacgtagctgtccaaccagctgctaca
gcgcgtggaggaccattacatccatccttgcctacaagacctcaattcgacctggtacca
aaggaagaagcagataagaaacagtccgaagcagttaagaaagctatgtcgaacaccgca
tccaactctgatatcgtcaagaaccgacgtgccatacggatggctaacctcaatgcggct
gaggctctcaaagctgagttgctgggtgatgatgagcctgaaactgttactgtcgaaaat
accgaagatgaggagaaggagcaactaccccttgaagaagccagagaggtactggaagaa
caaggtgaagatgagggtgtggacgaggagatagtccagcctgctatagtatctgatgag
gatgagggtgaagctcccataggtgatgagactattgaattggatgagggcgagtcacca
acgagaccaaataagagaaagaggactaagggagatgacgaagatgaagaggaaaatgga
gatgaggaggatgatgattcctcgtcgagtagttcagatgatgatgacgatgatgatgcg
ccgcctaatcccgaggcggaccagcctgtccctaagaagaagttgaaggtcaaccctgat
gggacggttgagggttacgaggacgacgtgaagctttgggaacctggttatagggagagg
tactatgaaaagaagtttggggtctcgttatctgatacggaattcatacagcagataacc
aaatcctacatggagggattatgttgggtgctagaatactattatcaaggtgtccccgct
tgggattggttctacccataccactatgctcctttcgcacaggacttcaaggatatcgat
aaattcaagattgaatttgagattagtgaaccgtttaaaccttttgctcagttattgggt
gtcttccccgctgcgagtcgaatacatctcccagaaccactccaacaactaatgatcaac
gaagattccccaatcctcgatttctatcccgatgatttcgagattgatatgaacggaaag
aaaatggcttggcagggtgtcgccctcttaccgttcattgatcaagatcgattactcgct
gcgctagaaagtaaagaaaaggaattgacgcctgatgagaagtttaggaatagatgggga
gataatattatgtttgtgtcgaatcagcaggagtatgggttgggggaagtttgctcggag
atgtatgggctgaaattcaaggacatcaatgtgcccgtcccgctcaaccccaaacagagc
gacggagcaaccggatccatcctagctgtaccgaactacatcccctactctacattcgaa
tctcccattcctgagattgacgaatgccccgatctaaccaataacaactccatctccgtc
cgatactacttccccaagcaggctcatccccaccgatcagtgatcttacctagatacaca
cccggtccatcgagattgaatgaaagcgataaagattgggtgcaacgcggaggaggcgga
ggaggacataggaaaggacctagacattctggcgggggtgatcagaggacaggcggacca
ggtatgggaagaggtggattccatcagactccccaacctagaacttctaatgggtatcct
acccctcctgcttcgggatatggaggatatgcccctcctcctgtcaatgcttataaccct
cctcctcggacttatggagggtatgcaccgccccctcctcaggctgcaccgtatggtgga
ggtgggtatggaggatatggaggaggagcttatagtgcgccgcaagggggatatggaggg
tatggaggtggatcggcttacagcgcatacaacccaccaccaccacgaccaaacccttat
gctgcacctccacctaatccgtacggtgctcccagaccagcttatggcgcaccacctcaa
gggagaggagggtataatccctatggaggtggtgggggggcttatcagcctaggaatgga
ggtggaggagggagaggggggaggaggtattag

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