Kwoniella bestiolae: 30206159
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Entry
30206159 CDS
T10967
Symbol
I302_103062
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kbi Kwoniella bestiolae
Pathway
kbi03013
Nucleocytoplasmic transport
kbi03015
mRNA surveillance pathway
kbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
30206159 (I302_103062)
09122 Translation
03013 Nucleocytoplasmic transport
30206159 (I302_103062)
03015 mRNA surveillance pathway
30206159 (I302_103062)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbi03019
]
30206159 (I302_103062)
03041 Spliceosome [BR:
kbi03041
]
30206159 (I302_103062)
Enzymes [BR:
kbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
30206159 (I302_103062)
Messenger RNA biogenesis [BR:
kbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
30206159 (I302_103062)
Spliceosome [BR:
kbi03041
]
Complex C
Other components
EJC/TREX
30206159 (I302_103062)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
30206159 (I302_103062)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
DNA_ligase_A_N
Ned1_M
Motif
Other DBs
NCBI-GeneID:
30206159
NCBI-ProteinID:
XP_019051311
UniProt:
A0A1B9GH28
LinkDB
All DBs
Position
1:complement(join(8201480..8201601,8201733..8201914,8201984..8202093,8202172..8202303,8202367..8202485,8203033..8203334,8203410..8203518,8203576..8203643,8203715..8203863))
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AA seq
430 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPAATTATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLR
AISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVAIVI
LCHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRT
MALVRDKKLNASKVKHFVLDECDKMLETLDMRRDVQEIFRATPHHKQVMMFSATLSKDIR
TTCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKS
VARATQLDALLQECNFPSICIHSALPQQERISRFQQFKAFEKRILVATDIFGRGIDVERV
NVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSDGDSEVLQKIQERFTVAIPTLPE
TIDPATYMTS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacctgatgaagaagagctcgttgactacgacgaggccgccgaggagacattc
gccccagctgctacgaccgctaccaacggtgataaagcggatggtgacaagaagggatct
tatgttggtatccactcgaccggtttcagagatttcctcttgaaacctgaattacttcga
gccatctctgatctcggtttcgaacatccttcagaagttcaacaagaatgtatcccccaa
gctatcttgggtactgatgtcttatgtcaagctaaatccggtatgggtaagaccgctgtc
ttcgtactcgcctgtttacaacagatcgaaccagtagatggagaagtcgcaatcgtcatt
ctgtgtcacacgcgagaattggcctaccaaatccgaaacgaatttgcaagattctccaag
ttcatgacaaacgtcaggacaggtgtcttctacggtggtaccccaatctccgccgaccag
gagatcttagcatccaaagagaaatgccctcacatcgtggttggaactccaggtagaacg
atggctttggtcagggacaagaagctgaacgcatcaaaggtcaagcacttcgttttggat
gaatgtgataagatgttagaaacacttgacatgcgaagagacgtccaagaaatcttccga
gccacccctcaccacaaacaagtgatgatgttctccgccactctgtccaaggacatccga
acgacctgtaagaagttcatgcaaagtcctcttgaaatctacgtcgacgacgagaccaaa
ttgaccttgcacggtcttcaacaatacttcctcaagctcgaggagaaggagaagaacagg
aagttgaacgatctgctcgataatctcgagttcaaccaggtctgcatcttcgtcaagtcc
gttgccagagccactcaactcgacgccttactgcaagaatgtaacttcccttctatctgt
attcactctgctctccctcaacaagaacgtatctcgcgattccagcaattcaaagctttc
gagaaacgtatcctggtagctaccgacatcttcggaagaggtatcgacgtcgagcgagtc
aacgtagttatcaactacgatgctcctgctgatgccgattcgtacctccatcgagtcggt
cgagctggtcgattcggtaccaagggtttagcaatctcattcgtatcttccgatggcgat
tccgaagtcctccagaagatccaagagagattcaccgttgctatccctactttaccggag
actatcgacccagccacttatatgacttcttag
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