KEGG   Kwoniella bestiolae: 30212024
Entry
30212024          CDS       T10967                                 
Symbol
I302_108010
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
kbi  Kwoniella bestiolae
Pathway
kbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    30212024 (I302_108010)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kbi03019]
    30212024 (I302_108010)
Enzymes [BR:kbi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     30212024 (I302_108010)
Messenger RNA biogenesis [BR:kbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     30212024 (I302_108010)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     30212024 (I302_108010)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DEXQc_Suv3 HTH_Tnp_ISL3 TerB_C
Other DBs
NCBI-GeneID: 30212024
NCBI-ProteinID: XP_065726657
UniProt: A0AAJ8KEN3
LinkDB
Position
7:join(217294..217517,217611..217957,218038..218246,218308..218403,218463..218495,218554..218699,218763..218895,218961..219065,219118..219224,219287..219888,219943..220038,220089..220156,220238..220600,220665..220850,220903..221032,221089..221219,221303..221530,221633..222100,222214..222382,222469..222488,222553..222561)
AA seq 1289 aa
MPGDEESSLADAAFLELLNTAANPSSDSALSSDELASALDIEGPLSKERALELLEKEVLA
PVENLQGDDLWRWQVQPPVDLPIPPLTLKPLHQTHIVTPSYKGIDGTFTHWREGLAPKPP
AHPTLSSSTTRAPGSLQNFVRGKGSYAPFLPGGLEAAAKPEEEEDEQEEEEAEGWKTRAP
GLRRGVQLDGADEFLAEMLGQQSIAAKAKRRRREGEFEPQLTISRLGDEDVEGEGEMEDI
STNGHAGPSSKNVDDLLPIGRLPAPPPPRRQFKAAVHKEWAHVVDVNQRLVNFNELVPEM
AREYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIK
ALSNQKFRDFKTTFDPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVI
FDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTP
MRPVPLEHFLWAGKDIHKIVDSKSHFLGDGYKTAQEATRRKQDKEREANGLPPVQRTGGR
GGAPGGGRAKDLPTGKNAPFTKPGAGRNHTNRAGGNGAPAPAVPARGGRGGGRGGFGGRA
SHQLDQNVWTHLINYLQKNSLLPVVNFVFSKKRCEEYAQNLGTKDLNNAKEKSEVHLTWE
RALTRLKGSDKTLPQILRMRDLLSRGIGVHHGGLLPLVKEVVELLFSRGLVKVLFATETF
AMGVNMPAKCVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTGTVIILSGEELPT
VTELNEMMLGTPNRLSSQFRLTYNMILNLLRVEALKVEEMIKRSFSENATQKMAPEQQRQ
IAHAEKQLSRLPNVECDICKTDIDAFYELSSEVVRLNQSIFKQASYAQNATKIFVPGRVV
ILRNGHLPGNLAILLRSATSLITDGVKSDAKAWRMLVLVAPGQRSRKEDVKESEVPPRWP
PVLPGGSFPNPQWEIATYDTTSLSFVVNRILKVDHSGIVDKSSKEPRDKALHDLTILHEE
LSSLPELPEVDWSRIRAVEFVDAVRQRAIIHDRLNKLGCQLCGDFQEHYSILHERKVVES
GLVSLKLSLSDQNLELLPDYNSRVEVLKNLKFIDDNSTVLLKGRVACEINSAPELILTEL
ILENILSEYEPEEVVALLSIFVFVEKSDSQPVIPPKIQQGLEVIYKIADEVERVQDRCSV
QYDQFDEKFKSGLVEVVYEWAKGMPFNQITELTDIPEGTIVRVITRLDETCREVRDAARV
IGDAELFQKMEAAQALIKRDIVFAASLYL
NT seq 3870 nt   +upstreamnt  +downstreamnt
atgccgggagacgaagagagctcgctcgccgacgctgcgtttctcgagctgctcaacaca
gctgccaacccctcatcggacagtgcactttcaagcgatgaactcgcgtcagccttagac
atcgaaggtcctctgagcaaagaacgagctttggagctgttagagaaggaggtactggcg
cctgtggagaacctccagggggatgatctttggagatggcaggtccaacctccagtagac
ttacccatccctcccctgaccttaaaacccctccatcagacacatatagtcacaccttcc
tacaagggtatagacggtactttcacacattggagagaaggtctggcacccaaaccacct
gctcatccgacattatcatcgtccactaccagagcacctggatcattacagaacttcgta
agggggaaagggagttatgcaccattcttacctggggggctggaagctgctgctaaacct
gaggaagaggaagatgagcaggaagaggaggaggccgagggttggaagactagagctccg
ggtctgagaaggggcgtccagcttgatggtgccgatgaattcctggcggagatgctaggc
cagcagtcgatagcggccaaagctaaacgaagaaggagagaaggggagttcgaacctcaa
ttaacgatatccaggcttggtgatgaagatgtggaaggtgaaggagaaatggaagacatt
agtacgaatggtcacgcaggacctagcagcaagaatgtggatgatctcctacctatagga
cgacttcctgctccaccgccacctagaagacagttcaaagctgctgtgcacaaagaatgg
gcacatgtcgtcgatgtcaatcagcggcttgtcaacttcaatgaacttgttcctgagatg
gcaagagagtacccctttgagcttgataacttccagaaggaagctgtctatagattggag
atgggagatagtgtctttgtcgctgcacacacttcagctggtaagacggtcgtagcggaa
tatgctatcgcattggcagccaaacatatgaccaaagcaatctacacgtcgcctatcaaa
gctttgtcgaatcagaaattccgagatttcaagacaacctttgatccttccactgttggt
attctgaccggtgatgtgcaaatcaacgcggagggtagttgtttgatcatgaccaccgaa
attctgcgaagtatgctttacaagggtgcagacttgattagagatgtggagtttgtcatt
ttcgatgaggtgcattatgtcaatgatgctgagcggggtgtggtttgggaggaagtcatc
attatgcttccggaacatgtgaatataatattgctttctgctactgtaccaaataccaag
gaatttgcagactgggtcggacgaacgaagaagaaagacatctacgtcatttccacacct
atgcgaccagtacctctcgaacatttcctatgggctggaaaagatatacataagattgtc
gattcgaaatcgcatttcctcggtgacggatacaagaccgctcaagaggctactcgtcgt
aaacaagataaagagcgagaagcaaatggtctaccgcctgttcagcgtaccggtggtaga
ggaggggcaccaggaggcggtcgagctaaagatctgcctaccggtaagaacgcgccgttc
actaaaccaggtgcgggacgtaatcacacgaaccgggctggtggcaacggggcacctgca
cccgctgtacccgcacgaggagggaggggaggaggaagaggtggttttggtggaagagca
agtcatcagctcgatcagaacgtttggacccaccttatcaactatctccagaagaactca
ctgttaccggtcgtcaactttgtgttcagtaagaagaggtgcgaagagtatgctcaaaat
ctcggaaccaaggatttgaataatgcgaaggagaagagtgaagtgcatctgacgtgggag
agggcgttaaccaggctgaaaggctctgacaaaacgttgcctcagatattgaggatgaga
gatctcttgagtagaggtatcggtgtgcatcatggtggattgttaccccttgtgaaagag
gtcgtcgaattgcttttctcgcgaggactggtcaaggtgctcttcgcgactgagacattt
gctatgggggtaaacatgcctgcgaaatgtgtagtcttttcgggtatccgcaaacacgat
ggaacatctttccgaaacctcttaccgggagaatatacccaaatggcaggtcgagccgga
cgaagaggtctcgacaccactggaacggttattatcctaagtggcgaggagctaccaaca
gtcacggaactgaacgaaatgatgcttggtacaccgaacaggttatcatcacaattcaga
ttgacgtacaatatgatcttgaatttgttaagggtagaagcgttgaaagtggaggaaatg
atcaagaggagtttctcagagaatgccacgcagaagatggcgccggaacagcagaggcag
attgctcatgccgaaaaacaattatcgagattacccaatgtcgaatgtgatatctgtaag
accgacatcgacgccttctacgaactgtcctctgaggtggtcaggttaaaccaatcgata
ttcaagcaagcgtcttatgctcaaaatgcaaccaagatcttcgtccctggacgagtggta
attctgcgtaatggacaccttcctggaaatctcgctatcttacttcgaagtgccaccagc
cttatcaccgatggtgtcaagtctgatgcaaaggcttggaggatgttggttctggtggct
cctgggcagaggtcaaggaaggaggatgtcaaagaatccgaagtaccgcctcgatggcca
cctgtcttacctgggggatcattccctaatcctcagtgggaaattgccacgtacgacact
acgagtctatcgttcgtagtcaaccgaattctcaaggtcgaccactctggtatagtcgat
aagagcagtaaagaacctcgagacaaggcgttgcacgacttgacgatcttacatgaggag
ctctcttctctacctgaattgccggaagtcgattggtcaaggataagagcggtagaattt
gtagatgctgttagacaaagagcgatcattcacgataggttgaataagctggggtgccag
ttatgtggtgacttccaggaacattactccatcctccacgaacgcaaagtcgtcgaatca
ggcctcgtatccctcaaattatccttatccgaccaaaacctagaattattacccgattac
aactcccgagttgaggtactcaagaacctgaaattcattgatgataattccacggtcctc
ctgaaaggaagggtagcgtgcgagatcaactctgcgcccgagctcatcctcactgagttg
atcttggagaatatattaagcgagtacgaacctgaagaggtcgttgctctactttccatc
tttgttttcgttgagaaatcagattctcagcctgtgattccaccgaagatccaacagggt
ttggaggttatatataagattgcggatgaggttgagagggtgcaggataggtgttcagtg
cagtatgatcagtttgatgagaaattcaagagtgggttggtagaggtggtttatgagtgg
gccaaagggatgcctttcaaccagattaccgaacttaccgatatacccgagggaacgatc
gtgcgagtcatcacccgattggatgagacctgccgagaagtacgggacgcagcgagggtg
attggtgatgcggaactgttccagaagatggaagctgcccaggcattgatcaagagggat
atcgtattcgctgctagtttgtatctataa

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