Kwoniella bestiolae: 30213057
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Entry
30213057 CDS
T10967
Symbol
I302_105376
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
kbi Kwoniella bestiolae
Pathway
kbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
30213057 (I302_105376)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbi03021
]
30213057 (I302_105376)
03019 Messenger RNA biogenesis [BR:
kbi03019
]
30213057 (I302_105376)
Transcription machinery [BR:
kbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
30213057 (I302_105376)
Messenger RNA biogenesis [BR:
kbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
30213057 (I302_105376)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf-CCHC
zf-CCCH_4
zf_CCCH_4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
30213057
NCBI-ProteinID:
XP_019042949
UniProt:
A0A1B9FSY1
LinkDB
All DBs
Position
3:complement(join(1835933..1836025,1836164..1836518,1836632..1837079,1837172..1837313))
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AA seq
345 aa
AA seq
DB search
MAAAASSSTPLDPHLGRAADFVRPDFHQVNLDVEGYLKAEKRYKLDSDTQICPLSLTPLG
CPLPPSQCPYRHTTPSPANFTLPPPLPPHPREREKKLTVCKHYLRNLCKMGDNCEYTHDW
NLRTMPVCVMFVKQGKCELGGECLYFHPRDRRVQCPDYNRGFCLLGGECPRKHIRRRLCG
AYQSGFCPDGEGCKLAHPPSDRPQPEEYINPIPPDPTQFTGPPPQLPAGYGRWREYKYDP
NAVVVPAPAWVEGGSLSGWRAGGFLSSNARRNDDGHGGHGHGGRSNENREVPQGAPAGYE
KKTGWVKDLSTVLCFRCNQYGHFANTCPNQAVPGDRGGLKRERDQ
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgctgcgagctcttcaacacccctcgacccccatctgggcagagcagcagat
ttcgtccgaccggattttcaccaggtcaatttggatgttgaagggtatctgaaagctgaa
aagaggtataagcttgattcggacacccaaatctgtcccctctcccttactccccttgga
tgtcctctccccccctcacaatgcccttaccgccataccaccccctcccccgcgaacttc
accttacctccacccctcccaccccaccccagagaacgcgaaaagaaactaacagtatgt
aaacattacctccgaaacctctgcaagatgggcgataattgcgagtacacgcatgactgg
aatctccgtacgatgcctgtgtgcgtgatgtttgtgaaacaggggaaatgcgagctggga
ggggaatgcctgtactttcatcctagggaccggagagtacagtgcccggattataatagg
gggttttgtcttttgggaggggagtgtcctaggaaacatattaggaggagactttgtggg
gcttatcagagcgggttttgtcctgatggtgaggggtgcaagcttgcccatcccccatcg
gaccgccctcagcccgaagaatatataaaccccatcccacccgaccccacccaattcacc
ggcccgccaccccaacttccagcaggatacggccgatggagggaatacaaatacgatccc
aacgctgtcgtcgtgcccgccccggcatgggtcgaaggtggttccctctctggatggagg
gcaggaggttttttgtcgagtaatgctaggcggaacgatgatggacatggcggacacgga
catggtgggaggtcgaatgagaatagggaggtaccgcagggggctcctgctgggtatgag
aagaagactggttgggttaaggatctgagtacggtgctgtgctttagatgcaatcagtac
ggccatttcgcaaatacctgtcctaaccaggctgtaccgggagatagaggtggactgaag
agggagagggatcagtaa
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