Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00154
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Entry
CKBE_00154 CDS
T02427
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Pathway
kbl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKBE_00154 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbl03021
]
CKBE_00154 (rpoC)
03400 DNA repair and recombination proteins [BR:
kbl03400
]
CKBE_00154 (rpoC)
Enzymes [BR:
kbl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKBE_00154 (rpoC)
Transcription machinery [BR:
kbl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKBE_00154 (rpoC)
DNA repair and recombination proteins [BR:
kbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKBE_00154 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AFZ83343
LinkDB
All DBs
Position
complement(150354..154538)
Genome browser
AA seq
1394 aa
AA seq
DB search
MKALIDLFKQVSQDEQFDSIKVSLASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTASKVRRERMGHIELASPVAHIWFLKSL
PSRLGIVLDMTLRDIERVLYFEAWCVIDAGMTPLKRCQIMTDDDFISKTEEYGDEFKALM
GAEAVRELLRTMDISREIEVLRNEIKNTNSEAKIKKISKRLKVMEGFHRSDIKAEWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGVNKRQLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGIPKLMALELFKPFIFNKLEMMGLSNTIKASKKMVDSQDPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLSSNNILFPANGEPSIVPSQDIVLGLYYATRERINGLGEHMCFSDVSEVQRAYHNN
EVELQSRVSVRITEYENDTEDNFSPVVNRYETTVGRALLSETLPKGLSFSVLNKALKKKE
ISRLINYSFRRCGLRATVIFADRLMQAGFSLATRAGISIAMEDMLIPDAKAEILSEANQE
VKEIDKQYSSGLVTSQERYNNVVDIWGKASDRVGKAMMEYIATEPVLDRDGNNIRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPISANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEYDCGTSHGYNMKALIEGGEVIESLRDRIL
GRVTASDIVNPDTRETIIPIGTLLDESFVEKIDSLGIDEVRIRTPLTCETRRGLCASCYG
RDLGRGSSIDIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASFVETKSNGVVGF
MGTMRYVTNPKGERIAISRSGELAVFDENSRERERHKIPYGAVLLVGDGENVKAGMRLSS
WDPLTRPIVSEYSGAVKFENIEEGVTVAKQVDELTGLSTLVVITPKTRGNKIMMRPQIKL
INEGGDEVKIAGTDHAVNIAFPIGALITVRDGQSVSIGEILARIPQESQKIRDITGGLPR
VAELFEARSPKDSGMLAEVTGTVSFGKETKGKQRLIITDLDGISHEFLISKEKQILVHDG
QVVNKGEIIVDGPADPHDILRLQGVESLVSYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVVISSPGDTKFIPGEQVERSELLNENDRVISQGGSQATYENILLGITKASLSTDSFIS
AASFQETTRVLTEAAVMGKRDDLRGLKENVIVGRLIPAGTGLSCHNARRAKTRSDELNKS
TARSSIDPFEAVSF
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctcttattgatctttttaaacaagtttcccaggatgagcagtttgattctata
aaggttagcctggcttctcctgagaagattcgttcttggtcatacggagaggttcgtaag
ccggaaactataaattatcgcacttttaaaccggaaagagatggtttattttgctcaaaa
atatttggtcctataaaggattacgagtgtttatgtggaaaatataagcgtctaaaacat
agaggtgttatttgtgagaaatgtggggttgaagtaaccgcatcaaaggttcgcagagaa
agaatggggcatatagagcttgctagtccagttgcacatatttggtttctgaaaagtttg
ccatctagattgggtatagtattagatatgacactacgtgatatagaaagagttctatac
tttgaggcttggtgtgttattgatgcaggtatgacacctctaaaacgttgtcagataatg
actgacgatgattttatatcaaaaacagaagaatatggcgatgaatttaaagctttgatg
ggtgccgaagcagtgcgtgaattattgcgtactatggatattagtcgagaaattgaagtt
cttaggaatgaaatcaaaaatactaattctgaggcaaaaataaagaagatatccaaaaga
ctaaaagtcatggaaggattccatagatccgatataaaagcagaatggatgattatggag
gtgttgcctgtattgcctcctgatttaagacctttagtgcctttagatggtgggcgtttt
gctacttctgacctaaatgatttgtaccgccgtgttataaatcgcaataatcgattgaaa
agattgatagagctaaaggctcctgagattattcttagaaatgaaaaaagaatgcttcaa
gaggcggttgattctttgcttgataatggtcgtagaggtaaagcaatgactggtgttaat
aagcgccagttaaagtccttagccgatatgattaaaggtaaaggtggtaggtttcgtcaa
aatctacttggcaaaagagtagattattcaggacgttctgttatcgttgttgggcctcag
ctcaagttgcatcaatgtggtatacctaaattaatggctttagagctatttaaaccattt
atatttaataagcttgaaatgatggggctttctaatactatcaaagcttctaaaaagatg
gttgatagtcaggatccagtagtgtgggatatcttggaggaggttattagagagcatccg
gttatgttgaatagagccccaacattacacagactaggcattcaggcttttgagcctgtt
cttattgaaggaaaagcgatacagctgcatcctctagtatgcgcagctttcaatgctgac
tttgacggggatcaaatggcagtacatgttcctttatctttagaggcgcaacttgaggct
cgtacccttatgctatcttctaataatatattatttcctgctaatggtgaaccatcgata
gttccttctcaagatatagtcttgggtttatattatgctactcgtgaacgtataaatggt
ttaggagagcatatgtgtttttctgatgtttcagaagttcaaagagcttatcataataac
gaagttgaattgcaaagtcgtgtttcagtgcgaatcacagaatatgagaatgatactgaa
gataatttttctcctgttgtgaatcgttatgaaactactgttggtcgggcattgctctca
gaaacattgccaaaaggcttatcattttctgtattaaataaggcattaaaaaagaaagag
atctctcgtttaataaattattctttcaggcgttgtggcttaagagctactgtgatcttt
gccgataggcttatgcaggctggtttttccttagcaactcgagctggtatatctattgct
atggaagatatgttaattccagatgcaaaggctgagattctttcagaggcaaatcaagaa
gttaaagaaatagataagcaatattcatcaggattggtaacttcccaggaaaggtacaat
aacgtagtagatatatggggtaaggccagtgatagagtaggtaaggccatgatggaatat
atagctactgagccagtattagatagagatggtaacaatattcgtcaggaatcatttaac
tctatttatatgatggctgattctggtgctcgtggttctgctgcgcagatacgtcagttg
gctggcatgagaggtttaatggcaaagcctgatggctccataattgaaacgccaattagt
gctaattttcgagaggggttaaacgttttacaatactttatctctactcatggagctcgt
aaaggtttagctgacactgctttaaaaacagctaattctggatatctgactcgtcgtttg
gtagatgttacacaggacttggtgattactgagtatgattgtggcacttctcatggttac
aatatgaaggctctaattgagggtggtgaagtaatagagtccttgcgcgatagaatactg
ggtcgagtcactgcatcagatattgttaatcctgacacaagagagacaatcattcctatt
ggtactttattagatgaaagctttgtagagaaaatagattctttaggtatagatgaggtt
cgaataaggactcctttgacttgtgaaacaagacgtggtttgtgtgcttcttgttatggt
agagatttggggaggggttcttctattgatataggtgaagcagtcggtgttatagctgct
cagtctattggtgagccaggaactcagttaaccatgagaactttccacattggtggagca
gcttctcgctcagctcttgctagttttgtagagacaaaatcaaatggtgttgttggtttc
atgggcactatgagatatgtaaccaatcctaaaggtgagcgtatagcaatttcacgctcg
ggagaactggctgtttttgatgagaattctcgagaacgtgaaaggcataaaataccttat
ggggctgtcttgttagttggagatggtgagaatgttaaggcaggcatgagattatcatcg
tgggatcctttaactagacctatagtgtctgagtattctggagctgtgaaatttgaaaat
atagaagagggtgttactgtagctaaacaagttgatgagttaacaggattatcaactttg
gttgtgattactccaaagactcgtggaaataagattatgatgcgtccacagattaaactt
attaatgagggtggagatgaggtaaaaatagctggcacagaccatgctgttaatatagct
ttcccaataggggctcttattactgttcgtgatggacaatcggtatcaataggagagata
ttggcaaggataccacaagagtcacaaaaaataagagatataactggtggtttgcctcgt
gtagcggagttatttgaagctagatctccaaaagattctggtatgcttgccgaggtaact
ggaactgtttcttttggaaaagaaacaaagggtaagcaaaggcttattataactgacctt
gatgggatttctcatgaattcttaatttctaaggaaaaacaaatattggtgcatgatgga
caggtagtcaataaaggagaaattatagtagatggtcctgcagatccgcatgatatacta
aggcttcagggtgtagaaagtcttgtctcttatatagttaacgaagttcaggatgtttat
cggttacaaggtgtaaaaataaatgataagcatatagaagttattgttcgtcaaatgtta
cgtagggttgtgatttctagtccaggggacacgaaatttattcccggagagcaagtagaa
aggtcagagctactaaatgagaatgatcgtgttatttctcaaggtggcagtcaggctact
tatgaaaatattctactagggattacaaaggcttcgctatctactgattcttttatatca
gcagcatcttttcaagagactactcgtgtgttgacagaagctgccgttatgggcaaacgt
gatgacttaagaggtcttaaagagaatgttattgttggtcgtttaattcctgctggtact
ggtttgtcatgtcataatgcacgtagagctaagacacgttctgatgagttaaataaatca
acagctaggagttcaattgatccttttgaggctgtcagtttttaa
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