Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00199
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Entry
CKBE_00199 CDS
T02427
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma-32 factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbl03021
]
CKBE_00199 (rpoH)
Transcription machinery [BR:
kbl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKBE_00199 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
HTH_11
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AFZ83388
LinkDB
All DBs
Position
203511..204398
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AA seq
295 aa
AA seq
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MTGSKGGFLTHSSSTSVVLDSFSLSGVGTIESYIANANRMPVLSADREVELARCLRDTGD
LGAAKELVLSHLRLVISIARQYLGYGLPHADLIQEGNIGLMKAIRRFDPERGVRLMSFAV
HWIKAEIHEFVIRNWRLVKIATTKAQRKIFFNLRSMRSNGNYLDSAQIDKIASSLNVRCE
DIREMEIRLSGSDIPIESREDDDDGYYPAEYLFDSKDEPDNILNKRDYDLMQSTGLKKAL
EVLDGRSRKIVESRWLQDESNHTLQELADEFGISAERVRQIESAAMKKMKKFLLK
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgactggatctaaaggtggctttttaacacattcttctagcacctcagtagtcttggat
tctttcagtcttagcggtgttggaactatagaatcatatattgctaatgctaacagaatg
cctgttctttcagctgatcgtgaagtggagctagcacgttgtttaagagatactggtgat
ttaggagctgccaaagaactggtactttcacatttgcgtttggtaatatcgatagcaagg
caatatttaggatatggtttgcctcatgctgacttaatacaggaaggtaatattggattg
atgaaggctataaggcgatttgaccccgaaagaggagtccgtcttatgtcatttgcagtt
cattggataaaagcagaaattcatgaattcgttataagaaattggcgcttggtaaaaatt
gctaccacgaaagctcaacgtaagatattttttaacttgcgtagcatgcgttctaatggt
aattaccttgattcagctcagatagataaaatagcaagtagcctaaatgttcgttgtgaa
gatataagagagatggagatccgtctttctggatccgatattcctatagagtctagagaa
gatgacgatgatggctattatcctgctgaatatttatttgattctaaggatgagccagat
aatatcttaaataagcgagattacgatcttatgcaatctactggtttaaaaaaagcgtta
gaagttttagatggtcgctcgcgcaaaatagttgaatcgcgctggttacaggatgaatct
aatcatactttacaagagttggcagatgaatttggaatatcagctgaaagggttcgtcaa
atagaatcagctgctatgaaaaaaatgaaaaaattcttgttaaaatga
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