Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00361
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Entry
CKBE_00361 CDS
T02427
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Pathway
kbl03420
Nucleotide excision repair
kbl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKBE_00361 (uvrD)
03430 Mismatch repair
CKBE_00361 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbl03400
]
CKBE_00361 (uvrD)
Enzymes [BR:
kbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKBE_00361 (uvrD)
DNA repair and recombination proteins [BR:
kbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKBE_00361 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CKBE_00361 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFZ83550
LinkDB
All DBs
Position
399180..401429
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AA seq
749 aa
AA seq
DB search
MILEELNKAQKEAVTLGASHALVLAGAGSGKTKVLASRLSWLLDTNQTAISSILAVTFTN
KAAREMISRVLKMVNIDIRGLWIGTFHGLCHRMLRIHSNEINLSKNFQIIDISDQISLIK
QIIKGNNINDLKYQPKDFQRFINSQKENGVRFIDVDINRNHNRYLLDFYKLYEDYCFTHD
LVDFSELLLRCYELLKNNDDIRRHYNDKFAHILIDEFQDTNKLQYKWINLIAGKQTSVFA
VGDDDQSIYAFRGADIDNMSSFEKTYAKGSVIRLEQNYRSFGNILGAANSLIKYNKGRLG
KTLWTEQGKGDPIRVVESSSDIAEAYWLVEEIRGLIRKGVSASDIAVLYRSNMQSRVIEH
ALFSSNIPYTVYGGLRFFERQEVKHALAYLRLILNPNDDNAWLRVVNFPPRGIGIRTIEN
HLEIAKSNNLSLMDSAKHVSGRGGVNISLFASLIDDLIINSNKLTLPELIEYTIDRSGLS
LYYKSDKDLYDRLENLKELITAATVFSIEEKYDSTPACSFSVNAQVEEEIITTPLIAFLS
NASLEASENISVNNNSSVQLMTVHASKGLEFRIVFITGAEEGLFPHENSISEDSGLEEER
RLMYVAITRAEERLYISMANSRMLRGQVRYPSRSRFLNEIDANHIQWSKSGGVYDNYPSR
SFKDGPNISYNKSSKNTLINIDCNVSSNKGLIVNDKLFLVGQSVNHGRFGEGVIVRLIGS
GNSTQAQVNFQKHGMKTLALSVAKLDIKE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgattctggaagaacttaataaagcgcaaaaagaggcagtaactttaggagcttcacat
gccttggttttggctggtgctggtagtggaaaaactaaggttttggcatcaagattatca
tggttgttggatactaaccagactgctatttctagtatattggctgtgacatttacaaat
aaagctgcacgtgaaatgatctctcgtgttttaaaaatggtaaatatagatatacgtggc
ttgtggataggaacttttcatggtctatgtcacagaatgcttagaatccattctaatgag
ataaatttgtctaaaaattttcaaatcatagatatctctgatcagatttcactcataaag
cagataattaagggtaataatattaatgatttaaaatatcaaccaaaagattttcagcgt
tttataaattcacagaaagaaaatggagttcgatttatagatgtggatattaacagaaac
cacaatcgttatttattagatttttataaattatatgaggattattgttttactcacgac
ttagtagatttttcagaattattgctaagatgctatgagcttttaaaaaataatgatgat
ataagaaggcattataatgataaatttgcccatatactgatagatgagtttcaagatact
aataaattgcaatataaatggataaatttaattgctggaaaacaaacttctgtttttgct
gttggtgatgatgatcagtccatatatgcatttcgtggtgccgatatagataatatgtcg
tcctttgaaaagacttacgccaaaggttctgtgattcggttagagcaaaactatagatct
ttcggaaatattttgggagcggctaattctttaataaagtataataaaggtcgtcttgga
aagactttatggacagagcaaggaaaaggtgatcctattagggttgttgaaagttctagt
gacatagctgaggcttattggttagttgaagaaataagaggtcttattaggaaaggagta
agtgccagcgatattgctgttttatatagaagcaatatgcaatctagggtcattgaacat
gctttgttttctagtaatataccgtatactgtttatggtggacttagattcttcgagcgt
caggaagttaagcatgctttagcttatttaagacttatattaaatccaaatgatgataat
gcttggctaagagttgtaaatttcccaccacgtggtattggaatacgtactatagagaat
catctagagatagcaaaatcaaataatttaagcttaatggattctgcaaaacatgtctct
ggaagaggaggtgtaaacatatcgttatttgctagtttaatagatgaccttattattaat
tctaataaacttactctaccagaattgatagaatatacgatagatcgcagcggactgagc
ctatattacaagagcgataaagatctgtatgatcgtttagagaacctgaaggagcttata
actgcagctactgtgttttctatagaggaaaagtatgatagcactccagcttgttcattt
tctgtaaatgcacaagtggaagaagagattatcactactccattgatagcatttctttcg
aatgcatcattagaggctagtgaaaatatttctgttaataataattcttcagtgcaatta
atgacagtacatgcatccaaaggtttagaatttagaattgtttttattacaggagctgaa
gaaggattatttcctcacgaaaatagcatatctgaggattctggtttagaagaagagcgt
cgtttaatgtatgttgcaataactagggcagaagaaagattatatatctctatggctaat
agtcgtatgctaagggggcaagttcgttatccatcgaggtctcgttttttaaatgaaata
gatgctaatcatatacaatggtctaaatcgggaggtgtttatgataattacccaagcaga
tcatttaaagatggccctaatattagttataataaatccagcaaaaacactctaatcaat
attgactgtaatgtttcttctaataaaggcttgattgtaaatgataagctatttttagtc
ggtcaatctgttaatcatggtcgttttggtgagggtgttatagtaagattgattggtagt
ggaaattcaacacaggctcaagttaattttcaaaaacatggcatgaaaactctagctcta
tcagtagctaagttggatataaaggaatag
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