Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00604
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Entry
CKBE_00604 CDS
T02427
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Pathway
kbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKBE_00604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbl03400
]
CKBE_00604
Enzymes [BR:
kbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKBE_00604
DNA repair and recombination proteins [BR:
kbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKBE_00604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
Proteasome_A_N
Motif
Other DBs
NCBI-ProteinID:
AFZ83793
LinkDB
All DBs
Position
671935..675393
Genome browser
AA seq
1152 aa
AA seq
DB search
MNFTDKSYISNITKNLLQMLKKGSKYFYERPFGSGTPMLIANMAINSKKLITVFTSNSLE
AKQISSDIKVFSPGLRVATMPDWEILPYDEFSPSNRIISERIKILHELLNKNIDVLTISI
TTAMHNISPPEFIAAYSFYFNKSDVINENNLKKQLEIANYKHVTQVRNFAEFCTRGNIID
IFPMGSITPYRIDLYDDTIESIRLFDPETQCSTGFIEKIEVLPGKEFPLDDQARKIFRTK
FREYFEGDPSKYSIYKEVGKGCYFQGMEYYLPFFFENTATIFEYLSSDSICIITNNIDNI
IDIYHSDINERYNFLKHDIERPIISPDNLFLTKESFNKKAKNFKQLSFKTLKNDYFTEIE
SLNNANLKSNWLEEIIKIINLNSECKILIFINSEKRIDLLQNRINSDTKFKASYPSSIQE
FINNNERCGLILAQISTSFRFSPNNLLVIAENSILNTENHNNHIIKRDNKKSRNIDAIVN
DISEISIGDPIVHNQHGIGRYNGLVHMQANGTEMELLQIEYANKASLYVPISHMHVVSRY
IGTDVESAPLNQLGSDQWEKKCKKAAKQIHDTATELLNLYAQRNNNKYGFSFKVQKEEYR
KFSDEFGFEETIDQINAINDVINDMVSEKSMDRLICGDVGFGKTEIALRAAFIAVSNNKQ
VSILCPTTLLSEQHTQTFINRFENWPVRIAELSRFKTKKEILQNIHDINNGNIDIVIGTH
KVLSKDVKFKNLGLVIIDEEHRFGVRQKELLKKTRPHVDVLTLSATPIPRTLGMSLEGIR
DFSIIATAPKKRLSIKTFIRKYNKNVIREAITRELRRSGQVYFLCNEVSTIENKKQSLET
IIPEAKIAIAHGQLHERDLESVMKAFYKGYYDILLCTTIIETGIDIPNANTIIIDHADNF
GLAQLHQLRGRVGRSYHQAYAYLLTQDEETITSQAKKRLEAIQKMEELGSGFYLAMHDLE
IRGAGEILGESQSGNNIHEIGYSMYNEILKSAIESIKNGKDYDLVNKNLQYCEVNIHEAA
LLPDRYCSDIPSRLEIYKRLSHTCDIDDLTIIKNELIDRFGKLPIQTENLILIHKIRINA
QSSYINEIDMSDKKITIKFHEKSNINPAKLIEIYKNSKILKFQPDNKVFINLSIPNIKER
SNEVLKIIKFLK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacagacaaatcttatatatctaatataactaaaaacttgttgcaaatgcta
aaaaaaggcagtaagtatttttatgaaagaccatttggatctggaacacctatgttaata
gctaatatggctattaacagtaaaaaactaattacggtattcacaagcaattctttagaa
gcaaaacaaatatcatctgatataaaagtattttcaccaggtttgcgtgtagccacaatg
ccagattgggagatattgccttatgatgaattttctccaagcaatagaataatctcagag
aggataaaaatcctacatgaattattaaataaaaatattgatgtattaacaatatctatt
acaacagctatgcataatatttccccaccagagttcatagcagcatatagtttttatttc
aataaaagtgatgtaataaatgaaaacaatcttaaaaaacaattggaaatagctaactat
aagcatgtaactcaggttagaaactttgcagaattttgcacaagaggaaatattattgat
atcttccctatgggatctataactccatatagaatagatctgtatgacgacactatagag
tcgataagattatttgatcctgagacacagtgcagtactggatttattgaaaagatagaa
gtattaccaggaaaagaatttccattagatgaccaagcaagaaaaatatttaggactaaa
tttagagaatattttgaaggagatccatcaaaatattcaatatataaagaagttggaaaa
ggatgttatttccaaggtatggaatactatctcccatttttttttgaaaacacagctact
atatttgaatatctatcaagtgatagcatatgcataatcacaaataatatagataatatt
atagatatataccattcagatataaatgaacgatataactttttaaaacatgatatagaa
aggcctataatatctccagataatctttttttaactaaagaatcattcaataaaaaagct
aaaaattttaaacaattatcatttaaaacattgaaaaatgattattttacagaaatagaa
agcctaaataatgctaatctaaaatcaaactggctagaagaaataattaaaattatcaat
ttgaatagtgaatgtaaaatacttatatttataaattcagaaaaaagaatagatttatta
caaaatagaattaactcagatactaaatttaaagcaagttacccatcttctatacaagaa
ttcattaataataatgaaagatgtggattaatacttgcacaaataagcacaagttttaga
ttctcacctaacaatcttcttgtaattgccgaaaatagcattttaaatactgaaaatcat
aataatcatataataaaacgagataacaaaaaatcacgtaacatagatgctatagtaaac
gatatttcagaaattagcataggagaccctatcgtacataatcaacatggaataggaaga
tataatggcttagtacatatgcaagctaatggaactgagatggagctcttacaaatagaa
tacgctaataaagcttctttatatgtacctatatctcatatgcatgttgtttcaagatat
ataggaactgatgtggaatcagcaccattaaatcagctaggatctgatcaatgggaaaaa
aaatgcaaaaaagctgcaaaacagattcatgatacagctacagaactactgaatttatat
gctcaacgcaataataataaatatggatttagttttaaagtgcaaaaggaagaatataga
aaattctcagatgaatttggttttgaggaaaccatagatcaaataaatgctattaacgat
gttataaatgacatggtatctgaaaaatcaatggatagactaatctgtggagatgtgggt
tttggaaaaacagagattgcactaagggcggcttttatagcagtatctaataacaagcaa
gtttctattttatgtccgacaactttgctatcggagcaacatactcagacatttataaat
agatttgagaattggcctgtacgcatagcagaattatctagattcaaaacaaaaaaagag
attcttcagaatattcatgatataaataatggcaatatagacatagttataggaacacat
aaagttttatctaaagatgtaaaatttaaaaatctaggactagttataatagatgaagag
catcgttttggtgtgcggcaaaaagaactgctaaaaaaaacaagaccacatgttgacgta
ctaacattaagcgcaactcctattccaagaacattaggaatgtccctagaaggaatcaga
gacttttctataatagcgacagcccccaaaaaaagactatctataaaaacatttataagg
aaatataataaaaatgttataagagaagctataacacgagaacttagacgaagtggtcag
gtatattttttatgtaatgaagtaagtactattgaaaataaaaaacaatcattagaaact
ataatacctgaagcaaagattgcaattgctcatggtcaactgcacgagagagatcttgaa
agtgtaatgaaggcattctataaaggttactatgatattttattatgtacaacaattata
gaaacaggtatagatattccaaatgctaatactataatcattgatcatgcagacaatttt
ggtttagctcaattacatcaacttagaggaagagttggtaggtcctatcatcaagcttat
gcctacttactaacccaagatgaagaaacaataactagtcaagcaaaaaaaagattagag
gcaatacaaaaaatggaggaattaggatcaggattttacctggccatgcatgacttagaa
ataagaggagcaggagaaattttaggagagtctcaatctggtaataatatacatgagatt
ggttattctatgtataacgaaatactaaaaagcgccattgaatctataaaaaatggaaaa
gattatgatcttgttaataaaaacttacaatactgtgaagtaaatatacatgaagcagca
ctattgccagatagatattgttctgatatcccatcaagattagaaatttataaacgattg
tctcacacttgtgatatagatgatctaactatcatcaagaatgaactaatagatagattt
gggaaactacctatacaaacagaaaatttaattctaattcataaaattagaattaatgct
caatcttcttatataaatgaaattgatatgtctgacaaaaaaataacaattaaatttcat
gaaaaatctaatataaatccggccaaattgatagaaatatataaaaattcaaaaatactt
aaatttcaaccagataacaaagtatttataaatttatccataccaaatataaaagagaga
tcaaatgaagtattaaaaataattaaatttctgaaatag
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