Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00646
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Entry
CKBE_00646 CDS
T02427
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Pathway
kbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKBE_00646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbl03019
]
CKBE_00646
Enzymes [BR:
kbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKBE_00646
Messenger RNA biogenesis [BR:
kbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKBE_00646
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Utp25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFZ83836
LinkDB
All DBs
Position
complement(723893..725236)
Genome browser
AA seq
447 aa
AA seq
DB search
MNQISFFDKDIKTSSFREFGLDFSIVSVLDEIGYVKPTLIQESAIPNILSGADFIGAAQT
GTGKTAAFVLPIINRLVPFANNSISPARHLLRSLILVPTRELADQVYECVKLYSKNTNLR
SLVLFGGVDLEHQKDLLHKGCEILVATPGRLIAHIIQRNVSLVNVDILVLDEADRMLDMG
FIPDVDRIVRMLPKKRQSLLFSATFSEDVRKLGLTYLKDPVEADVTVPNSIADTVKQISY
KVLSNEKYDAILFLIRSTEMKHVIVFTNTKIGANKLASYLSSNKISADCIHGDRTQKERI
RILNDFKSSNLDVLVATDVVARGLDIAGISHVVNFDIPHNAEDYVHRIGRTGRANNEGIA
VSLYYSEEEIYLLGIEKLTKSIIPRLEICYKSKAPATYNRSRTPIILDDKGSNNIIHGFD
PINDKSILSAKIMSKIALLLGGTGRRL
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaatcagtttttttgataaagatataaaaacaagctcttttagagagttcggc
ttagacttctcaatagtgagtgttcttgatgagattggatatgtcaaaccaacactgatt
caggaatctgctattccaaatattttatcaggcgctgattttattggtgctgctcaaaca
ggaactggaaagactgctgcttttgttttgccaataatcaatagattagtgccttttgca
aataacagtatttcgccagcacgtcatttattgcgttcccttatactagttcctactaga
gaattggcagatcaggtttatgaatgtgtaaaactttatagcaagaatactaatttacgt
agtctagtactatttgggggggttgatttagaacatcaaaaggacttattgcataaggga
tgtgaaatattagtagctactccaggtagattaattgcccatataatccagagaaatgta
tctctagttaatgttgacatattagttttagatgaggccgatcgtatgcttgatatgggt
tttattccagatgtcgacagaatagttagaatgcttcctaaaaaaaggcagagtttatta
ttttctgccacatttagtgaagatgttcgaaaattaggtttaacatatctgaaagaccca
gtggaggctgatgtcactgttccaaattctatagcagatacagttaagcagatttcttat
aaagtacttagtaatgagaagtatgatgctatattgtttttaatacgtagtactgaaatg
aagcatgttatagtatttaccaatactaaaattggagcaaataagttagctagctattta
tcctcaaacaaaataagtgctgattgtatccatggagatagaacccagaaagaaagaata
agaattcttaatgattttaaatctagcaatttagatgttttggttgcgactgatgttgtt
gctcgtgggctagatatagcaggtatttcccatgttgtaaatttcgacatccctcataat
gctgaagactatgttcatagaataggtcgtacggggagagcaaataacgaagggattgct
gtctctttatattactcagaagaagagatttatttattaggaatagagaagcttactaaa
agcattattcctagattagagatttgttataaaagcaaggctccagcaacatacaataga
tccagaaccccaattattcttgatgataagggaagcaacaatattatccatggctttgat
cctattaacgacaaatctattttaagtgccaaaattatgagcaagatagcattattactt
ggaggaacagggcgacgactttaa
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