Candidatus Kaiserbacteria bacterium NC_groundwater_79_Ag_B-0.1um_58_26: HYS26_04235
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Entry
HYS26_04235 CDS
T09896
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kbn
Candidatus Kaiserbacteria bacterium NC_groundwater_79_Ag_B-0.1um_58_26
Pathway
kbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYS26_04235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbn03021
]
HYS26_04235 (rpoC)
03400 DNA repair and recombination proteins [BR:
kbn03400
]
HYS26_04235 (rpoC)
Enzymes [BR:
kbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYS26_04235 (rpoC)
Transcription machinery [BR:
kbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYS26_04235 (rpoC)
DNA repair and recombination proteins [BR:
kbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYS26_04235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ECH_2
ATPaseInh_sub_z
Motif
Other DBs
NCBI-ProteinID:
QQG37803
UniProt:
A0A7T5UJJ4
LinkDB
All DBs
Position
complement(720125..723826)
Genome browser
AA seq
1233 aa
AA seq
DB search
MQRRRDVIPQDFAAVAMRLASPDRIGEWSHGEITKPETINYRTQRPEKNGLFDERVFGPE
KDYECYCGKYRGIRFRGIVCEKCGVEITRAIVRRERMGHIDLATPVAHIWFLRGIPSRIA
LMLGLSAAEVEKVVYFAGYIVTHVDESERSRLLKDLEQELQQKSKAAATAEVKTDLKEKA
QKAKKEIESIRMGVVLDEAAYHLFAVKYGAMFRAAIGAEALFNILKQIDVEKFIGELKEL
YEKASSAERDKLRKRLALAESLQRAGVRPEWMFIMRLPVVPPALRPMVALEGGRHASSDL
NDLYRRVINRNNRLKRLLAIHAPEVILRNEKRILQEAVDALLDNSMRRGAGVSGILGGRR
RALKSLADYLKGKHGYLRQNLLGKRVDYSGRSVIVVGPDLALDECGLPKHMALELFRPFV
IHGLLSRELAYNIRGAGRLIEDEAPEVWPILEEAIKSKYVLLNRAPTLHRQSIQAFRPVL
IEGNAIQVHPLVCPAYNADFDGDAMAVHVPLSEAAQMEAERIMSANKNILKPGSGDVVVA
SKLLDIVLGCYWMTKSIDGGAGEGKSFPTTNAAITAYDFGGIDLRAKIKVLPGDSKKYAQ
FGGKVFETTVGRLLFNSVLPSDFPFVNEEITNKRMQALVQNLVTHYKLDGIPAILDKIKA
FGFRYATHAGITWSLSDVIVPKVKEEMVEKGREAATRELESFREGLLTEDERRRSTIEIW
AKVSNDLRKHVVESLDKTGPVHDMITSGARGSVVQLHQMAGMKGLITNPRGEIIEFPITS
SLKEGLTPIEYFISTHGARKGLADTALNTARAGYLTRRLFDVAHDVVVLEDDCGTKEGVM
IHRPGKENIGGSFADRIQGRVLAEDAGAFKRNHLLNRDDSKAIEEDMGVAEVTLRSPITC
KVARGVCQKCYGMDLTTGELVDLGESIGVIAAQAIGEPGTQLTMRTFHTGGVATAGGDIT
MGLPRVEEVFESRMPKLPATIARVSGVVADIVKDGQETVITIVPEVASTAKTAKGAKKET
EYRVHPLRTIVVKSGDNVQKGDFLTDGSADIEELFHLAGKERTLEYIINEITRIYELQGV
STARKHLEVIVKQMFSRVQVTSSGDTGVSAGEIIADFELERINKVAKETDGEPAKAKQLL
LGITEVSLTRASFLSAISFQNTPRKLAEAAVGGAVDRLVGLKENVIIGRLIPAGTGFRGS
KKEKMVAQMEAELAAKEPVEVPTTERDRDTVER
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgacgaagagatgtaattccacaggattttgcggctgtcgcgatgcggctcgct
tcgcccgaccgaatcggggagtggtcgcacggcgaaatcacgaagcccgagacaatcaac
taccgtacacagcggccggagaagaacgggctctttgacgagcgcgtcttcggccccgaa
aaagactacgagtgttactgcggcaagtaccgcggcatccgcttccgcggcatcgtctgc
gagaagtgcggcgtcgagattacgcgtgccatcgtgcgccgcgagcgcatgggccacatc
gacctcgcgacaccggtcgcacacatttggttcttgcgcggtattccttcccgcatcgcc
ctcatgctcggcctctcggccgcagaggtggagaaggtcgtgtacttcgcgggctacatc
gttacgcacgtcgacgagagcgagcgcagccgcctcttgaaggatttggagcaggagctt
cagcaaaagagcaaggcagccgcaaccgccgaagtgaagacggacctcaaagaaaaggcg
cagaaagccaaaaaggagatcgaatcgatccgcatgggcgtcgtcctcgacgaggccgcg
taccacctctttgcggtgaagtacggcgcgatgttccgcgcggcgatcggcgccgaagcg
ctcttcaatattctgaaacagatcgacgtcgagaagtttatcggcgagctgaaggagctc
tacgagaaagcctcgtccgccgagcgtgacaagcttcggaagcgcctcgcgctcgcggag
agcttgcagcgcgcgggcgtccggcccgagtggatgttcatcatgcggctccccgtcgtg
cctcccgccctgcggcccatggtcgcactcgaaggcggccgtcacgcttcgtcggacttg
aacgacctctaccgtcgcgtcatcaaccgcaacaaccgtctgaagcgcctcctcgcgatt
cacgcgcccgaggtgatcctccgcaacgaaaagcgcattctccaggaagcggtggacgcg
ctcctcgacaactccatgcgccgcggcgcaggcgtctccggtattctcggcggccgccgc
cgcgccctcaaatcgctcgccgattacctcaaaggcaaacacggctacctccgccagaac
ctcctcggaaagcgtgtcgactactcgggccgctcggtgatcgtcgtcggtccggatctc
gcactcgacgagtgcggacttccgaagcacatggcgctggagctcttccgcccgttcgtg
attcacggccttctctcgcgcgaactcgcgtacaacatccgcggcgccgggcgcctcatc
gaagacgaggcgccggaagtctggcccatcctcgaagaagcgatcaaatcgaaatacgtg
ctcttgaaccgcgcgccgacccttcaccgccagtcgatccaggcattccgcccggttctc
atcgaaggcaacgcaatccaggtgcaccccttggtgtgtcccgcatacaacgccgacttc
gacggagacgcgatggccgtgcacgtgccgctttcggaagcggcgcagatggaagcggag
cgcatcatgtcggccaacaaaaacatcctgaagcccggttccggggacgtggtcgtcgca
tccaaactgctcgacatcgtgctcggctgttactggatgaccaagtcgatcgacggcggc
gcgggagaagggaagtccttccccaccacgaacgccgcgatcaccgcatacgatttcggc
ggcatcgacctccgcgccaagatcaaggtgcttccgggagacagcaagaagtacgcgcag
tttggcggcaaagtcttcgagacgaccgtcggacgcctcctcttcaattccgtgctcccg
agcgactttccgttcgtcaacgaagagatcaccaacaagcgcatgcaggctctcgtgcag
aatctcgtaacgcactacaagctcgacggcatccccgcgattctcgacaagatcaaggcg
ttcggtttccgctacgccacgcacgcgggcatcacgtggtcgctctccgacgtcatcgtg
ccgaaggtcaaggaagaaatggtggagaagggccgcgaggccgcgacgcgcgagctcgag
agcttccgcgaaggactcctcaccgaagacgaacgccgccgctcgacgatcgagatttgg
gcgaaggtctccaacgatctccgcaaacacgtcgtggaatcgctcgacaagaccggtccc
gtacacgacatgatcacctccggcgcacgtggctctgtggtgcagttgcaccagatggcc
ggtatgaagggcctcatcacgaacccgcgcggtgagatcatcgagttcccgatcacgtcg
tccctgaaagagggcctcacgccgatcgaatacttcatctccacgcacggcgcccgcaaa
ggcttggccgacaccgccctcaacacggcgcgcgccggttacctcacgcgccgcctcttc
gatgtggcgcacgacgtggtggtcttggaagacgactgtggcaccaaagagggagtcatg
atccaccgcccgggcaaggaaaacatcggcggctcgtttgccgaccgcatccaggggcgc
gtactcgcagaagacgcgggtgccttcaagcgcaatcacctcttgaaccgcgacgactcc
aaagcgattgaagaagacatgggcgtcgcggaagttactcttcgctcgccgatcacatgc
aaagtcgctcgcggcgtctgtcagaagtgctacggcatggatctcacgacgggcgagctc
gtggatctcggtgagagcatcggcgtcatcgccgcgcaggcgatcggcgagccgggcacg
cagctcaccatgcgcaccttccacacgggaggcgtggcgacggcgggcggcgacatcacc
atggggctcccgcgcgtcgaagaagtcttcgagtcgcgcatgccgaagctcccggcgacg
atcgcgcgcgtttcgggcgtcgtggccgacatcgtgaaagatggccaggagaccgtgatc
accatcgtccccgaagtggcttccaccgcaaagaccgcaaaaggcgccaagaaagagacc
gaataccgcgtgcacccgctccgcaccatcgtggtcaaatcgggcgacaatgtgcagaag
ggcgacttcctcactgacggctccgccgacattgaagagctcttccaccttgccggcaag
gagcgcacgctggaatacatcatcaacgaaatcacccgcatctatgaattgcagggcgtc
tcgactgcccgcaagcacctcgaagtcatcgtgaagcagatgttcagccgcgtgcaggta
accagttccggcgacacgggcgtctccgcaggcgagatcatcgccgacttcgagctcgag
cgcatcaacaaggtggccaaagagaccgacggcgagccagccaaagccaagcaactcttg
ctcggcatcacggaggtttcgctcacgcgcgcatccttcctctcggcgatctccttccaa
aacacgcctcgcaagctcgctgaagctgccgtgggaggcgcagtggaccgcctcgtggga
ctcaaggaaaacgtgatcatcggccgcctcatcccggcgggtaccggattccgcggctcc
aagaaagagaaaatggtggcgcagatggaagccgagctcgccgccaaagagccggtggag
gtaccgacgaccgagcgcgatcgcgacacggtcgagcgataa
DBGET
integrated database retrieval system
